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The map label for this gene is ycbU [H]

Identifier: 120597092

GI number: 120597092

Start: 283282

End: 284403

Strand: Direct

Name: ycbU [H]

Synonym: Sputw3181_0261

Alternate gene names: 120597092

Gene position: 283282-284403 (Clockwise)

Preceding gene: 120597091

Following gene: 120597094

Centisome position: 6.02

GC content: 44.21

Gene sequence:

>1122_bases
ATGTTTAGCGATTTTAAAAAGGATTTTTGTCTCGCCAATCCCGGTTATTTGTTGAGCCACTCCGTAGGGCGTCCACTTAA
GTCAACCGAACAAGTCTTTAAAGAAGCATTTTTTGCACCATGGCAGGACTCTGGGCGTGAACCTTGGGGACAATGGTTAA
GCGTGATTGATGATTTTACCTTTGCTTTATCTAAGTTATTTAACGGTCACCAAAAGGATTTTTGCCCTCAGGTTAATTTG
TCGAGTGCGTTAGCAAAAATCCTGATGTCTTTGGCACGCCTAAACCGCGAACATGCCGTGGTGTTGATGAGTGAAATTGA
TTTCCCTAGCATGGGTTTTGCTATTAAAAAGGCATTACCCGCCAGTTGTGAAGTGCGTTTTATTCCTAAAACGTTAGATA
TAACCGATGCCAATGTATGGGATGCCCATATGGGCTCGGATATCGATTTAGTGTTTGTTAGCCATGCATATTCCAATACT
GGGCAGCAGGCTCCGCTTGCGAATATCTTGGCGATGGCACGTCAATATGGCTGCTTAAGTGTGGTCGATGTTGCGCAATC
CGCTGGAATTATTCCGCTTAATTTAGCTCAGTTACAACCTGACTTTTTGATAGGGTCGAGTGTGAAGTGGCTTTGCTCTG
GCCCCGGAGCCGCTTACCTTTGGGTTAACCCTAGCATTATAGACAGTTGCCAACCTAAGGATGTGGGTTGGTTTAGCCAT
GAAAATCCCTTTGAATTTAATATCCATGATTTTCGTTATCACAACTCGGCACTGCGTTTTTGGGGTGGAACGCCCTCTAT
TGCGCCCTATGCCATTGCCGCCCACAGTATTCATTATTTTGCCGATATAGGGGTTGAACAATTGCGTAAAGGGAACCAGC
TATTGATTGATATCGTTGCCGAGGCGCTAGATCAAGAGTTTGTATCACCTAGAGAGATAGAAAAACGCAGTGGCACCTTA
GTTTTGCAATTTGGTGAACAACAAGGGCAAATAATGGCAGCCCTTGCCAAGGCAAATATCAGTGTGGATGCTCGTAGTAT
GGGGATACGTATTTCGCCGCATATTTATAATGATAAAGCCGATATTCAGTTGCTATTGAGTGTGATCAAGGCTCATCGCT
AA

Upstream 100 bases:

>100_bases
CTCGAAAAACTTCGAGATAGGCGTGCAGCCACTAAACGCAGTGATATTCGTACCCGCTATGATGATCTTAACTGTTTAAA
AGAGAGTTTGAGGTAATACC

Downstream 100 bases:

>100_bases
CGTAAATGATTTAAAATGGCGGCGTTAACTCATCGTCACACAGGCAGCGGTGCTTGGATTTGAGGTTATTTATTGGGTGC
GATCATGCTTAAATCTTGTA

Product: aminotransferase, class V

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MFSDFKKDFCLANPGYLLSHSVGRPLKSTEQVFKEAFFAPWQDSGREPWGQWLSVIDDFTFALSKLFNGHQKDFCPQVNL
SSALAKILMSLARLNREHAVVLMSEIDFPSMGFAIKKALPASCEVRFIPKTLDITDANVWDAHMGSDIDLVFVSHAYSNT
GQQAPLANILAMARQYGCLSVVDVAQSAGIIPLNLAQLQPDFLIGSSVKWLCSGPGAAYLWVNPSIIDSCQPKDVGWFSH
ENPFEFNIHDFRYHNSALRFWGGTPSIAPYAIAAHSIHYFADIGVEQLRKGNQLLIDIVAEALDQEFVSPREIEKRSGTL
VLQFGEQQGQIMAALAKANISVDARSMGIRISPHIYNDKADIQLLLSVIKAHR

Sequences:

>Translated_373_residues
MFSDFKKDFCLANPGYLLSHSVGRPLKSTEQVFKEAFFAPWQDSGREPWGQWLSVIDDFTFALSKLFNGHQKDFCPQVNL
SSALAKILMSLARLNREHAVVLMSEIDFPSMGFAIKKALPASCEVRFIPKTLDITDANVWDAHMGSDIDLVFVSHAYSNT
GQQAPLANILAMARQYGCLSVVDVAQSAGIIPLNLAQLQPDFLIGSSVKWLCSGPGAAYLWVNPSIIDSCQPKDVGWFSH
ENPFEFNIHDFRYHNSALRFWGGTPSIAPYAIAAHSIHYFADIGVEQLRKGNQLLIDIVAEALDQEFVSPREIEKRSGTL
VLQFGEQQGQIMAALAKANISVDARSMGIRISPHIYNDKADIQLLLSVIKAHR
>Mature_373_residues
MFSDFKKDFCLANPGYLLSHSVGRPLKSTEQVFKEAFFAPWQDSGREPWGQWLSVIDDFTFALSKLFNGHQKDFCPQVNL
SSALAKILMSLARLNREHAVVLMSEIDFPSMGFAIKKALPASCEVRFIPKTLDITDANVWDAHMGSDIDLVFVSHAYSNT
GQQAPLANILAMARQYGCLSVVDVAQSAGIIPLNLAQLQPDFLIGSSVKWLCSGPGAAYLWVNPSIIDSCQPKDVGWFSH
ENPFEFNIHDFRYHNSALRFWGGTPSIAPYAIAAHSIHYFADIGVEQLRKGNQLLIDIVAEALDQEFVSPREIEKRSGTL
VLQFGEQQGQIMAALAKANISVDARSMGIRISPHIYNDKADIQLLLSVIKAHR

Specific function: Unknown

COG id: COG0520

COG function: function code E; Selenocysteine lyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Caenorhabditis elegans, GI17550466, Length=394, Percent_Identity=24.1116751269036, Blast_Score=90, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000192
- InterPro:   IPR020578
- InterPro:   IPR015424
- InterPro:   IPR015421 [H]

Pfam domain/function: PF00266 Aminotran_5 [H]

EC number: NA

Molecular weight: Translated: 41413; Mature: 41413

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSDFKKDFCLANPGYLLSHSVGRPLKSTEQVFKEAFFAPWQDSGREPWGQWLSVIDDFT
CCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
FALSKLFNGHQKDFCPQVNLSSALAKILMSLARLNREHAVVLMSEIDFPSMGFAIKKALP
HHHHHHHCCCCHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHCCC
ASCEVRFIPKTLDITDANVWDAHMGSDIDLVFVSHAYSNTGQQAPLANILAMARQYGCLS
CCCEEEEECCEECCCCCCCCHHCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCHH
VVDVAQSAGIIPLNLAQLQPDFLIGSSVKWLCSGPGAAYLWVNPSIIDSCQPKDVGWFSH
HHHHHHHCCCEEEEHHHCCCCEEECCCCEEEECCCCEEEEEECCHHHCCCCCCCCCCCCC
ENPFEFNIHDFRYHNSALRFWGGTPSIAPYAIAAHSIHYFADIGVEQLRKGNQLLIDIVA
CCCEEECEEHEEEECCEEEEECCCCCCCHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHH
EALDQEFVSPREIEKRSGTLVLQFGEQQGQIMAALAKANISVDARSMGIRISPHIYNDKA
HHHHHHCCCHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCEEEHHHCCEEECCEEECCCH
DIQLLLSVIKAHR
HHHHHHHHHHHCC
>Mature Secondary Structure
MFSDFKKDFCLANPGYLLSHSVGRPLKSTEQVFKEAFFAPWQDSGREPWGQWLSVIDDFT
CCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
FALSKLFNGHQKDFCPQVNLSSALAKILMSLARLNREHAVVLMSEIDFPSMGFAIKKALP
HHHHHHHCCCCHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHCCC
ASCEVRFIPKTLDITDANVWDAHMGSDIDLVFVSHAYSNTGQQAPLANILAMARQYGCLS
CCCEEEEECCEECCCCCCCCHHCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCHH
VVDVAQSAGIIPLNLAQLQPDFLIGSSVKWLCSGPGAAYLWVNPSIIDSCQPKDVGWFSH
HHHHHHHCCCEEEEHHHCCCCEEECCCCEEEECCCCEEEEEECCHHHCCCCCCCCCCCCC
ENPFEFNIHDFRYHNSALRFWGGTPSIAPYAIAAHSIHYFADIGVEQLRKGNQLLIDIVA
CCCEEECEEHEEEECCEEEEECCCCCCCHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHH
EALDQEFVSPREIEKRSGTLVLQFGEQQGQIMAALAKANISVDARSMGIRISPHIYNDKA
HHHHHHCCCHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCEEEHHHCCEEECCEEECCCH
DIQLLLSVIKAHR
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9274031; 9384377; 7704254; 1353026 [H]