Definition Shewanella sp. W3-18-1 chromosome, complete genome.
Accession NC_008750
Length 4,708,380

Click here to switch to the map view.

The map label for this gene is 120597065

Identifier: 120597065

GI number: 120597065

Start: 257712

End: 258212

Strand: Direct

Name: 120597065

Synonym: Sputw3181_0233

Alternate gene names: NA

Gene position: 257712-258212 (Clockwise)

Preceding gene: 120597064

Following gene: 120597066

Centisome position: 5.47

GC content: 48.9

Gene sequence:

>501_bases
ATGGCTCGGTATTCACCAGAACGTAAAGAGGCGATCCTTAAAAAATTATTACCTCCTCACAACTTAACGGTCGCAGAGGT
CGCTCGGGAAGAAGGCATCGCGGTGCAAACCTTGTATCATTGGCGAGATATTGCCAGAAAAGAAGGTCGCCCCGTGCCAG
GTAAAACATTAACAGCCGATGATTGGTCGGCTGAAGCAAAACTTGCCGTGATTATTGAAACAGCGCCGCTGTCGGAAGCG
GAGATAAACCAGTATTGCCGTGAAAAGGGCTTGTTCCGCGAGCAAGTACAGCAGTGGAAACAGGATTGTTTAGCTGGTTT
TCAAACCTCAGAAGTACAAACTAAAACCATTAAACAGCAGGCTAAGGCTGACAAAGCCGAAATCAAATCGCTGCAACGGG
AATTGCGCTATAAGGAGAAAGCGCTGGCTGAAGCTGCTGCGTTACTGGTGCTCAGAAAAAAGCTCAATGCGCTCTGGGGG
GACGACAGCGAGGAGAGCTAA

Upstream 100 bases:

>100_bases
GGCACCATATATTCAAGTTAAACCTCCCCCTGTGTCAGGATTGTTGTCACCCCTAAATAATCATTATGTTTAAAGACAGG
GTGCGGCAAAAGAGAACGAT

Downstream 100 bases:

>100_bases
CCCCCTTGCCTGAGCGCATAGCATTGATTGCCTTAATCCAAGAGGCGTATACCCAGGGTGCTCGCCTTTATAAGGCTTGT
GCTGAAACGGGCCTCAGTAA

Product: transposase IS3/IS911 family protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 166; Mature: 165

Protein sequence:

>166_residues
MARYSPERKEAILKKLLPPHNLTVAEVAREEGIAVQTLYHWRDIARKEGRPVPGKTLTADDWSAEAKLAVIIETAPLSEA
EINQYCREKGLFREQVQQWKQDCLAGFQTSEVQTKTIKQQAKADKAEIKSLQRELRYKEKALAEAAALLVLRKKLNALWG
DDSEES

Sequences:

>Translated_166_residues
MARYSPERKEAILKKLLPPHNLTVAEVAREEGIAVQTLYHWRDIARKEGRPVPGKTLTADDWSAEAKLAVIIETAPLSEA
EINQYCREKGLFREQVQQWKQDCLAGFQTSEVQTKTIKQQAKADKAEIKSLQRELRYKEKALAEAAALLVLRKKLNALWG
DDSEES
>Mature_165_residues
ARYSPERKEAILKKLLPPHNLTVAEVAREEGIAVQTLYHWRDIARKEGRPVPGKTLTADDWSAEAKLAVIIETAPLSEAE
INQYCREKGLFREQVQQWKQDCLAGFQTSEVQTKTIKQQAKADKAEIKSLQRELRYKEKALAEAAALLVLRKKLNALWGD
DSEES

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18872; Mature: 18741

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARYSPERKEAILKKLLPPHNLTVAEVAREEGIAVQTLYHWRDIARKEGRPVPGKTLTAD
CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
DWSAEAKLAVIIETAPLSEAEINQYCREKGLFREQVQQWKQDCLAGFQTSEVQTKTIKQQ
CCCCCCEEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
AKADKAEIKSLQRELRYKEKALAEAAALLVLRKKLNALWGDDSEES
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
ARYSPERKEAILKKLLPPHNLTVAEVAREEGIAVQTLYHWRDIARKEGRPVPGKTLTAD
CCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
DWSAEAKLAVIIETAPLSEAEINQYCREKGLFREQVQQWKQDCLAGFQTSEVQTKTIKQQ
CCCCCCEEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
AKADKAEIKSLQRELRYKEKALAEAAALLVLRKKLNALWGDDSEES
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA