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The map label for this gene is arnC [H]

Identifier: 120596897

GI number: 120596897

Start: 81108

End: 81839

Strand: Direct

Name: arnC [H]

Synonym: Sputw3181_0064

Alternate gene names: 120596897

Gene position: 81108-81839 (Clockwise)

Preceding gene: 120596894

Following gene: 120596898

Centisome position: 1.72

GC content: 50.82

Gene sequence:

>732_bases
TTGATCTCTATTGTGATCCCCGCTAAAGATGAGGTGGGCAATATTGGCCCCCTGATGGAAGAGATATGCCAAGCCCTCCA
AGGTTTGACTGAGTTTGAAATCCTTGTCGTAGATGATGGCAGCCAAGACGATACCTTTGGTGAAGTGATGCGTACCGCAG
CTGAACAGCAATGTGATGCGAAAGCGATTCGCCATGAGCGTAGCACAGGGCAGAGTACCGCCATTTCGACTGGCGTTTTA
CATGCGCGCGGCAAATATATTGTGACCTTAGATGCCGATGGTCAAAATGATCCCGCCGATATTCCGGCCATGTTTGCCCA
GTTGCCTCAGATCCAAGCCGAGCACTTCTGTATTGCGGGCTACCGTAAAAATCGTAAAGATACGGCCTGGAAGCGATTCC
AGTCTCGCTTTGCGAATAAAGTTCGCGATGCGCTTCTGCACGATGGCGTGCCTGATACGGGCTGCGGCCTTAAGTTAATT
CCCCGTGAAACCTTCCTTCGCTTGCCCTATTTCGACCATATGCACAGGTATATTCCTGCTTTAGTGCGGCGTATGGACGG
TGAGATTTTTATTTCGGTGGTGAATCATAGGGATCGTCAAGTGGGTATCTCTAAGTACACGGCTTGGAATCGTGTCTGGG
TTGGTATCGTCGATATTATGGGCGTGATCTGGCTTGGGCGCAGAGCCAAAGTCGCCAAGATTGCACGCAGTGAATCGAGC
TGGCGCGACTAA

Upstream 100 bases:

>100_bases
TTAGTGTTTTTTTTGCCAATCATCCCTATTTTTCCAGATTTTAATTTTGCAATAATTATGTGCTACCGTATTTTTTGTCA
TAAAGTTGTGGAGCGTTGAA

Downstream 100 bases:

>100_bases
GATGAAGCGACTCTATAAGGCGATATTTATCGTATGTATTTTGCTGGTATTGATGCTTGCCGCCCAACAGGGATTATTCG
AGCACGTTACTGATAGCAAC

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: Undecaprenyl-phosphate Ara4FN transferase; Ara4FN transferase [H]

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MISIVIPAKDEVGNIGPLMEEICQALQGLTEFEILVVDDGSQDDTFGEVMRTAAEQQCDAKAIRHERSTGQSTAISTGVL
HARGKYIVTLDADGQNDPADIPAMFAQLPQIQAEHFCIAGYRKNRKDTAWKRFQSRFANKVRDALLHDGVPDTGCGLKLI
PRETFLRLPYFDHMHRYIPALVRRMDGEIFISVVNHRDRQVGISKYTAWNRVWVGIVDIMGVIWLGRRAKVAKIARSESS
WRD

Sequences:

>Translated_243_residues
MISIVIPAKDEVGNIGPLMEEICQALQGLTEFEILVVDDGSQDDTFGEVMRTAAEQQCDAKAIRHERSTGQSTAISTGVL
HARGKYIVTLDADGQNDPADIPAMFAQLPQIQAEHFCIAGYRKNRKDTAWKRFQSRFANKVRDALLHDGVPDTGCGLKLI
PRETFLRLPYFDHMHRYIPALVRRMDGEIFISVVNHRDRQVGISKYTAWNRVWVGIVDIMGVIWLGRRAKVAKIARSESS
WRD
>Mature_243_residues
MISIVIPAKDEVGNIGPLMEEICQALQGLTEFEILVVDDGSQDDTFGEVMRTAAEQQCDAKAIRHERSTGQSTAISTGVL
HARGKYIVTLDADGQNDPADIPAMFAQLPQIQAEHFCIAGYRKNRKDTAWKRFQSRFANKVRDALLHDGVPDTGCGLKLI
PRETFLRLPYFDHMHRYIPALVRRMDGEIFISVVNHRDRQVGISKYTAWNRVWVGIVDIMGVIWLGRRAKVAKIARSESS
WRD

Specific function: Catalyzes the transfer of 4-deoxy-4-formamido-L- arabinose from UDP to undecaprenyl phosphate. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1788588, Length=208, Percent_Identity=29.3269230769231, Blast_Score=94, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI25146207, Length=203, Percent_Identity=27.0935960591133, Blast_Score=72, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022857
- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: =2.7.8.30 [H]

Molecular weight: Translated: 27422; Mature: 27422

Theoretical pI: Translated: 8.00; Mature: 8.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISIVIPAKDEVGNIGPLMEEICQALQGLTEFEILVVDDGSQDDTFGEVMRTAAEQQCDA
CEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHH
KAIRHERSTGQSTAISTGVLHARGKYIVTLDADGQNDPADIPAMFAQLPQIQAEHFCIAG
HHHHHHHCCCCHHHHHHHHEEECCCEEEEEECCCCCCCCHHHHHHHHCCCHHHCCEEEEC
YRKNRKDTAWKRFQSRFANKVRDALLHDGVPDTGCGLKLIPRETFLRLPYFDHMHRYIPA
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHHCCCCHHHHHHHHHH
LVRRMDGEIFISVVNHRDRQVGISKYTAWNRVWVGIVDIMGVIWLGRRAKVAKIARSESS
HHHHCCCCEEEEEECCCCHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC
WRD
CCC
>Mature Secondary Structure
MISIVIPAKDEVGNIGPLMEEICQALQGLTEFEILVVDDGSQDDTFGEVMRTAAEQQCDA
CEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHH
KAIRHERSTGQSTAISTGVLHARGKYIVTLDADGQNDPADIPAMFAQLPQIQAEHFCIAG
HHHHHHHCCCCHHHHHHHHEEECCCEEEEEECCCCCCCCHHHHHHHHCCCHHHCCEEEEC
YRKNRKDTAWKRFQSRFANKVRDALLHDGVPDTGCGLKLIPRETFLRLPYFDHMHRYIPA
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHHCCCCHHHHHHHHHH
LVRRMDGEIFISVVNHRDRQVGISKYTAWNRVWVGIVDIMGVIWLGRRAKVAKIARSESS
HHHHCCCCEEEEEECCCCHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC
WRD
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12219091 [H]