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The map label for this gene is yciR [C]

Identifier: 119947315

GI number: 119947315

Start: 4537377

End: 4539560

Strand: Direct

Name: yciR [C]

Synonym: Ping_3722

Alternate gene names: 119947315

Gene position: 4537377-4539560 (Clockwise)

Preceding gene: 119947314

Following gene: 119947321

Centisome position: 99.51

GC content: 42.86

Gene sequence:

>2184_bases
ATGCCAAATAATATTCCGCAACCCAAAATTCTGATTGTCGATGACCGAATAGAAAATATTCGTTCGATGAAACGGGTGCT
TGAGTTAATAGATGCTGAGCTTTACACTGCGCAGTCCGGTATTGAAGCGCTGGGATTTTTATTACGTCATGACTTTTCGA
TGATTCTGCTCGACGTAATGATGCCGGAAATGGATGGTTTTGAAACCGCGGAACTGATTCGTGGCAACCTCAACAGCCAG
CATACACCGATCATCTTTGTTACAGCGGCTGACAAAGATGAGAGCTTTGAATTCAAAGGTTATGATGTCGGTGCTGTCGA
TTACCTTTATAAACCGATTCAGCCCCATATATTGCAGAGAAAAGTACGTTTTTTTCTGCAGTTGAGTAATAATAAGAGCC
TGCTGGAGAACAGTCTATGCGAGCTAAAGCGGGTAAAAGATCACAATGAACTGCTCCTAAAATCAACTGCCGAAGGTATT
ATCAGTCTGGATCCGATGGGAAAGATAAACTTTGCCAATCCAGCTGCCAAACAGCTACTGATGTATAACGATGATACTAT
ACTGGGTATTGATTATGCTCATATTCAGGGCACTGATAATCTAACATCCCCTTTTAAAGACTGTGCGCTTCATCATACCG
CATTATCTAAACGTATTATCCATGATGATCAGCAGTCCTTTCATTGCTTTGATGGCAGCAGCTTCCCGGTTGAGTTTACC
GCCAGTCCGATTTGTAAAACCAACTCCGAAAGCTCCGGTATAGTATTGGTATTTCAGGATATCAGTGAGCGCAAAAAAAC
AGAACAACAATTAACCCGTCTTGCACAATATGACTGCCTCACCGGGCTACCCAATCGAGCACTGTTTACCAGTCTTCTGA
GTCAGGCAATTTCCCGCTCTGACCGCCGTAAAAACAAACTGGCATTACTTTTTCTGGATTTGGATCGTTTTAAACAAGTT
AATGATTCCTTAGGACATGATGTGGGTGATCTGCTTTTACAGCAGGTGGCCCAGCGACTTCAGTTGGCGACCCTAGAAGG
TGGCACGGTCAGTCGGCTAGGTGGTGATGAATTTATGGTGATTTTAGAGGAGGTCAACTCCGAATCTCATAAAGCTGCCA
AGCTGGCCCAAAAAATGATAACCAGCCTGGATGCCCCTTTTAATATCCTGGGTCGTGAGGTATTAATTAGTACCAGCATA
GGTATTGCACTCTGCTCAGGCTCGACGCAGTGTATAGACTCTTTGTTGAAACGTGCTGATATGGCAATGTACCGGGCGAA
AGAACAAGGGCGAAATAATTTTCAGTTTTATACCGCCGAACTGCAGCAACAGGCGTCAAAGTCAATAGAGTTAGAAAACC
GCTTACGTCATGCGCTGCAGCGAAAAGAGTTCTTTTTACATTATCAGCCACAGGTTGATACAAATAGCGGCCAGATTATC
GGTCTTGAGGCGCTATTACGTTGGCAACCCGATGGCCAGGCACTTATTTCGCCAGAAGAATTTATACCGGTTGCCGAAGA
AGCCGGGCTTATAGTCCCTATTGGCGAGTGGGTACTGCGTGAAGCCTGTTCGCAGCTTCACCGCTGGCATAGATCTGGTT
TGTTATCACCAACCGTAAAAATGGCGGTAAATCTGTCGGTACGACAGCTGGAGCATACATCGCTGCTAAGTACATTAACT
CAAATTCTACAAGAAACCGGTCTTAAACCATCTCAGTTGGAGTTGGAAATTACTGAGACTGCGGTGATGAAAGATCCTGA
TCTGGTAGTGAATATACTTCATAGTATTCACGCGATGGGAATTCAACTGTCTTTGGATGATTTCGGCACGGGTTATTCAT
CCTTGCGTTATCTGAAATTATTGCCTTTGCATGTATTAAAAATTGATCGTTCATTTATCAATGATATTGGTGGTAAACAA
AGGGATCAAGCAATACTGGAATCTATTATCTATTTATCCAGAAATCTGGACTTAACGGTAGTAGCTGAAGGGGTTGAGAC
ACAAGAACAACTAGATTTTCTAAGTCGCTTTAACTGCCATTCTATTCAGGGTTATTACATCAGTAAACCAAAATCAGCAG
CTAACATTGAAAAACTACTCCACAAAAATAAAGACGGCAATTTACTACCTATGAAAACCTCTGTAATACCAGATAGACTG
ATTTTGCTACCTGAGGTCTATTGA

Upstream 100 bases:

>100_bases
ATTTGGGTATAGATTGCTGAGATCACGCTTAGTTATATCAAACGCCAAGACTGTTGTAGTTAGGCGATAAATATTAGAAA
TAAAAGAAGAGAGATTCGTG

Downstream 100 bases:

>100_bases
TTTTTATACATTTATTGTGCTCTTTCATGGTGGTTTTTCGTTTTTTGACAAAGTAATCTGGGCCCGGCTCAAGGAAAAAT
ACCTAGAGTACGTCATTCCA

Product: response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 727; Mature: 726

Protein sequence:

>727_residues
MPNNIPQPKILIVDDRIENIRSMKRVLELIDAELYTAQSGIEALGFLLRHDFSMILLDVMMPEMDGFETAELIRGNLNSQ
HTPIIFVTAADKDESFEFKGYDVGAVDYLYKPIQPHILQRKVRFFLQLSNNKSLLENSLCELKRVKDHNELLLKSTAEGI
ISLDPMGKINFANPAAKQLLMYNDDTILGIDYAHIQGTDNLTSPFKDCALHHTALSKRIIHDDQQSFHCFDGSSFPVEFT
ASPICKTNSESSGIVLVFQDISERKKTEQQLTRLAQYDCLTGLPNRALFTSLLSQAISRSDRRKNKLALLFLDLDRFKQV
NDSLGHDVGDLLLQQVAQRLQLATLEGGTVSRLGGDEFMVILEEVNSESHKAAKLAQKMITSLDAPFNILGREVLISTSI
GIALCSGSTQCIDSLLKRADMAMYRAKEQGRNNFQFYTAELQQQASKSIELENRLRHALQRKEFFLHYQPQVDTNSGQII
GLEALLRWQPDGQALISPEEFIPVAEEAGLIVPIGEWVLREACSQLHRWHRSGLLSPTVKMAVNLSVRQLEHTSLLSTLT
QILQETGLKPSQLELEITETAVMKDPDLVVNILHSIHAMGIQLSLDDFGTGYSSLRYLKLLPLHVLKIDRSFINDIGGKQ
RDQAILESIIYLSRNLDLTVVAEGVETQEQLDFLSRFNCHSIQGYYISKPKSAANIEKLLHKNKDGNLLPMKTSVIPDRL
ILLPEVY

Sequences:

>Translated_727_residues
MPNNIPQPKILIVDDRIENIRSMKRVLELIDAELYTAQSGIEALGFLLRHDFSMILLDVMMPEMDGFETAELIRGNLNSQ
HTPIIFVTAADKDESFEFKGYDVGAVDYLYKPIQPHILQRKVRFFLQLSNNKSLLENSLCELKRVKDHNELLLKSTAEGI
ISLDPMGKINFANPAAKQLLMYNDDTILGIDYAHIQGTDNLTSPFKDCALHHTALSKRIIHDDQQSFHCFDGSSFPVEFT
ASPICKTNSESSGIVLVFQDISERKKTEQQLTRLAQYDCLTGLPNRALFTSLLSQAISRSDRRKNKLALLFLDLDRFKQV
NDSLGHDVGDLLLQQVAQRLQLATLEGGTVSRLGGDEFMVILEEVNSESHKAAKLAQKMITSLDAPFNILGREVLISTSI
GIALCSGSTQCIDSLLKRADMAMYRAKEQGRNNFQFYTAELQQQASKSIELENRLRHALQRKEFFLHYQPQVDTNSGQII
GLEALLRWQPDGQALISPEEFIPVAEEAGLIVPIGEWVLREACSQLHRWHRSGLLSPTVKMAVNLSVRQLEHTSLLSTLT
QILQETGLKPSQLELEITETAVMKDPDLVVNILHSIHAMGIQLSLDDFGTGYSSLRYLKLLPLHVLKIDRSFINDIGGKQ
RDQAILESIIYLSRNLDLTVVAEGVETQEQLDFLSRFNCHSIQGYYISKPKSAANIEKLLHKNKDGNLLPMKTSVIPDRL
ILLPEVY
>Mature_726_residues
PNNIPQPKILIVDDRIENIRSMKRVLELIDAELYTAQSGIEALGFLLRHDFSMILLDVMMPEMDGFETAELIRGNLNSQH
TPIIFVTAADKDESFEFKGYDVGAVDYLYKPIQPHILQRKVRFFLQLSNNKSLLENSLCELKRVKDHNELLLKSTAEGII
SLDPMGKINFANPAAKQLLMYNDDTILGIDYAHIQGTDNLTSPFKDCALHHTALSKRIIHDDQQSFHCFDGSSFPVEFTA
SPICKTNSESSGIVLVFQDISERKKTEQQLTRLAQYDCLTGLPNRALFTSLLSQAISRSDRRKNKLALLFLDLDRFKQVN
DSLGHDVGDLLLQQVAQRLQLATLEGGTVSRLGGDEFMVILEEVNSESHKAAKLAQKMITSLDAPFNILGREVLISTSIG
IALCSGSTQCIDSLLKRADMAMYRAKEQGRNNFQFYTAELQQQASKSIELENRLRHALQRKEFFLHYQPQVDTNSGQIIG
LEALLRWQPDGQALISPEEFIPVAEEAGLIVPIGEWVLREACSQLHRWHRSGLLSPTVKMAVNLSVRQLEHTSLLSTLTQ
ILQETGLKPSQLELEITETAVMKDPDLVVNILHSIHAMGIQLSLDDFGTGYSSLRYLKLLPLHVLKIDRSFINDIGGKQR
DQAILESIIYLSRNLDLTVVAEGVETQEQLDFLSRFNCHSIQGYYISKPKSAANIEKLLHKNKDGNLLPMKTSVIPDRLI
LLPEVY

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=487, Percent_Identity=35.9342915811088, Blast_Score=312, Evalue=5e-86,
Organism=Escherichia coli, GI87081921, Length=474, Percent_Identity=31.2236286919831, Blast_Score=242, Evalue=5e-65,
Organism=Escherichia coli, GI226510982, Length=415, Percent_Identity=32.0481927710843, Blast_Score=217, Evalue=2e-57,
Organism=Escherichia coli, GI1788381, Length=555, Percent_Identity=27.5675675675676, Blast_Score=164, Evalue=2e-41,
Organism=Escherichia coli, GI1788502, Length=249, Percent_Identity=35.3413654618474, Blast_Score=154, Evalue=3e-38,
Organism=Escherichia coli, GI1787055, Length=449, Percent_Identity=27.1714922048998, Blast_Score=148, Evalue=1e-36,
Organism=Escherichia coli, GI1790496, Length=241, Percent_Identity=33.6099585062241, Blast_Score=148, Evalue=1e-36,
Organism=Escherichia coli, GI87081845, Length=261, Percent_Identity=34.0996168582375, Blast_Score=147, Evalue=2e-36,
Organism=Escherichia coli, GI87081980, Length=264, Percent_Identity=37.1212121212121, Blast_Score=147, Evalue=2e-36,
Organism=Escherichia coli, GI87081743, Length=238, Percent_Identity=35.7142857142857, Blast_Score=139, Evalue=5e-34,
Organism=Escherichia coli, GI1788849, Length=483, Percent_Identity=27.7432712215321, Blast_Score=139, Evalue=8e-34,
Organism=Escherichia coli, GI1786507, Length=233, Percent_Identity=33.0472103004292, Blast_Score=129, Evalue=7e-31,
Organism=Escherichia coli, GI87081881, Length=205, Percent_Identity=36.0975609756098, Blast_Score=105, Evalue=1e-23,
Organism=Escherichia coli, GI87082096, Length=252, Percent_Identity=29.7619047619048, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI1788956, Length=163, Percent_Identity=40.4907975460123, Blast_Score=98, Evalue=2e-21,
Organism=Escherichia coli, GI145693134, Length=167, Percent_Identity=33.5329341317365, Blast_Score=98, Evalue=2e-21,
Organism=Escherichia coli, GI1786584, Length=202, Percent_Identity=30.6930693069307, Blast_Score=96, Evalue=8e-21,
Organism=Escherichia coli, GI87081977, Length=215, Percent_Identity=32.093023255814, Blast_Score=93, Evalue=7e-20,
Organism=Escherichia coli, GI1787816, Length=167, Percent_Identity=34.1317365269461, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1787802, Length=170, Percent_Identity=30.5882352941176, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1787262, Length=164, Percent_Identity=31.0975609756098, Blast_Score=77, Evalue=5e-15,
Organism=Escherichia coli, GI1789650, Length=458, Percent_Identity=20.7423580786026, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI87081974, Length=111, Percent_Identity=35.1351351351351, Blast_Score=71, Evalue=3e-13,
Organism=Escherichia coli, GI1788085, Length=169, Percent_Identity=28.4023668639053, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1787410, Length=226, Percent_Identity=26.1061946902655, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI87082007, Length=161, Percent_Identity=27.3291925465839, Blast_Score=63, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 81859; Mature: 81728

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50110 RESPONSE_REGULATORY ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNNIPQPKILIVDDRIENIRSMKRVLELIDAELYTAQSGIEALGFLLRHDFSMILLDVM
CCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MPEMDGFETAELIRGNLNSQHTPIIFVTAADKDESFEFKGYDVGAVDYLYKPIQPHILQR
CCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCCCEEECCCCCCHHHHHHCCCCHHHHHH
KVRFFLQLSNNKSLLENSLCELKRVKDHNELLLKSTAEGIISLDPMGKINFANPAAKQLL
HHHHHHEECCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHEE
MYNDDTILGIDYAHIQGTDNLTSPFKDCALHHTALSKRIIHDDQQSFHCFDGSSFPVEFT
EECCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEEC
ASPICKTNSESSGIVLVFQDISERKKTEQQLTRLAQYDCLTGLPNRALFTSLLSQAISRS
CCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
DRRKNKLALLFLDLDRFKQVNDSLGHDVGDLLLQQVAQRLQLATLEGGTVSRLGGDEFMV
HCCCCCEEEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEECCCCCEECCCCCHHEE
ILEEVNSESHKAAKLAQKMITSLDAPFNILGREVLISTSIGIALCSGSTQCIDSLLKRAD
EEEHHCCCHHHHHHHHHHHHHHCCCCHHHHCCHHEEEECCCEEEECCCHHHHHHHHHHHH
MAMYRAKEQGRNNFQFYTAELQQQASKSIELENRLRHALQRKEFFLHYQPQVDTNSGQII
HHHHHHHHCCCCCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHEEEEECCCCCCCCCCEE
GLEALLRWQPDGQALISPEEFIPVAEEAGLIVPIGEWVLREACSQLHRWHRSGLLSPTVK
EEEHHEEECCCCCEEECHHHCCCCHHHCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCHHH
MAVNLSVRQLEHTSLLSTLTQILQETGLKPSQLELEITETAVMKDPDLVVNILHSIHAMG
HHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHCCCHHHHHHHHHHHHHHC
IQLSLDDFGTGYSSLRYLKLLPLHVLKIDRSFINDIGGKQRDQAILESIIYLSRNLDLTV
EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEE
VAEGVETQEQLDFLSRFNCHSIQGYYISKPKSAANIEKLLHKNKDGNLLPMKTSVIPDRL
EECCCCHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCE
ILLPEVY
EECCCCC
>Mature Secondary Structure 
PNNIPQPKILIVDDRIENIRSMKRVLELIDAELYTAQSGIEALGFLLRHDFSMILLDVM
CCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MPEMDGFETAELIRGNLNSQHTPIIFVTAADKDESFEFKGYDVGAVDYLYKPIQPHILQR
CCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCCCEEECCCCCCHHHHHHCCCCHHHHHH
KVRFFLQLSNNKSLLENSLCELKRVKDHNELLLKSTAEGIISLDPMGKINFANPAAKQLL
HHHHHHEECCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHEE
MYNDDTILGIDYAHIQGTDNLTSPFKDCALHHTALSKRIIHDDQQSFHCFDGSSFPVEFT
EECCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEEC
ASPICKTNSESSGIVLVFQDISERKKTEQQLTRLAQYDCLTGLPNRALFTSLLSQAISRS
CCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
DRRKNKLALLFLDLDRFKQVNDSLGHDVGDLLLQQVAQRLQLATLEGGTVSRLGGDEFMV
HCCCCCEEEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEECCCCCEECCCCCHHEE
ILEEVNSESHKAAKLAQKMITSLDAPFNILGREVLISTSIGIALCSGSTQCIDSLLKRAD
EEEHHCCCHHHHHHHHHHHHHHCCCCHHHHCCHHEEEECCCEEEECCCHHHHHHHHHHHH
MAMYRAKEQGRNNFQFYTAELQQQASKSIELENRLRHALQRKEFFLHYQPQVDTNSGQII
HHHHHHHHCCCCCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHEEEEECCCCCCCCCCEE
GLEALLRWQPDGQALISPEEFIPVAEEAGLIVPIGEWVLREACSQLHRWHRSGLLSPTVK
EEEHHEEECCCCCEEECHHHCCCCHHHCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCHHH
MAVNLSVRQLEHTSLLSTLTQILQETGLKPSQLELEITETAVMKDPDLVVNILHSIHAMG
HHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHCCCHHHHHHHHHHHHHHC
IQLSLDDFGTGYSSLRYLKLLPLHVLKIDRSFINDIGGKQRDQAILESIIYLSRNLDLTV
EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEE
VAEGVETQEQLDFLSRFNCHSIQGYYISKPKSAANIEKLLHKNKDGNLLPMKTSVIPDRL
EECCCCHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCE
ILLPEVY
EECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]