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The map label for this gene is dapB [H]

Identifier: 119947250

GI number: 119947250

Start: 4461793

End: 4462524

Strand: Reverse

Name: dapB [H]

Synonym: Ping_3648

Alternate gene names: 119947250

Gene position: 4462524-4461793 (Counterclockwise)

Preceding gene: 119947251

Following gene: 119947249

Centisome position: 97.87

GC content: 45.22

Gene sequence:

>732_bases
ATGGTCACAGTTATCGTAAATGGTGCAAAAGGGCGTATGGGCAGTGAAGCTGTTAATGCGATAAATAACGACCCGGCACT
GCAATTGGTTGGGCAGTGTGATGTTGGTGATGACTTAACCCAGCTTATTATTGCGTCTGGTGCACAGGTGGTGGTTGATT
TGACTGCGGCTTCTGCTGGTTTTAATAATACCAAAACTATTTTAAATGCAGGTGCTCGGCCTGTTGTTGGTACAAGTGGC
TTTCAAGTTGAACAAGTAAAAGAACTGCAGGCATTAGCGGCGGAGAAAAAATTAGGTGGTTTAATTGCGCCTAATTTCTC
CGTGGGGGCTGTATTGATGATGAAATTTGCAGCAGAAGCGGCCAAATATCTACCTGATGCTGAAATTATCGAAGCGCACA
GTACGCAAAAAGAGGAAAGCCCTTCTGGTACAGGTATCCGCACCGCAGAGTTAATTGCACAAGCGCGCATTAAAAACGCG
ACGGCTTTTAATGATACAGAGCTACTCGAGGGTGCTCGCGGGGCCGAGTTACATGGTGTGAAAATACATTCTATACGCTT
ACCCGGGGTGGTCGCACAACAAACGGTTTTCTTTGGCGGTTTAAGTGAAACCTTAAAGATTGAGCATAACTCGTTGCATC
GGGAGTCATTTATGCCGGGTATTTGTCTGGCTTGTAAGCAGGTCGTAAAGCGTAATGAATTAGTTTACGGCTTAGAGCAT
TTGATGGATTAA

Upstream 100 bases:

>100_bases
GCGGCCTATTTTATAACAAAGGTTAACTAAAACGCTGTTGTTAAAAAATTAATTAGATTCTACAGATACAATTTATACTA
GAAATAGTAAGGAAATAAAA

Downstream 100 bases:

>100_bases
GCTTGTTTATCTGAGATATTCATAGGCTTATTTCAGTCAATTAATTGCGGTTAATGCACGGTAGAGCGTTATAAATCAAA
CTGTTATCATTGTTTTCGAT

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR [H]

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MVTVIVNGAKGRMGSEAVNAINNDPALQLVGQCDVGDDLTQLIIASGAQVVVDLTAASAGFNNTKTILNAGARPVVGTSG
FQVEQVKELQALAAEKKLGGLIAPNFSVGAVLMMKFAAEAAKYLPDAEIIEAHSTQKEESPSGTGIRTAELIAQARIKNA
TAFNDTELLEGARGAELHGVKIHSIRLPGVVAQQTVFFGGLSETLKIEHNSLHRESFMPGICLACKQVVKRNELVYGLEH
LMD

Sequences:

>Translated_243_residues
MVTVIVNGAKGRMGSEAVNAINNDPALQLVGQCDVGDDLTQLIIASGAQVVVDLTAASAGFNNTKTILNAGARPVVGTSG
FQVEQVKELQALAAEKKLGGLIAPNFSVGAVLMMKFAAEAAKYLPDAEIIEAHSTQKEESPSGTGIRTAELIAQARIKNA
TAFNDTELLEGARGAELHGVKIHSIRLPGVVAQQTVFFGGLSETLKIEHNSLHRESFMPGICLACKQVVKRNELVYGLEH
LMD
>Mature_243_residues
MVTVIVNGAKGRMGSEAVNAINNDPALQLVGQCDVGDDLTQLIIASGAQVVVDLTAASAGFNNTKTILNAGARPVVGTSG
FQVEQVKELQALAAEKKLGGLIAPNFSVGAVLMMKFAAEAAKYLPDAEIIEAHSTQKEESPSGTGIRTAELIAQARIKNA
TAFNDTELLEGARGAELHGVKIHSIRLPGVVAQQTVFFGGLSETLKIEHNSLHRESFMPGICLACKQVVKRNELVYGLEH
LMD

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786214, Length=269, Percent_Identity=26.0223048327138, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040 [H]

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N [H]

EC number: =1.3.1.26 [H]

Molecular weight: Translated: 25658; Mature: 25658

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: PS01298 DAPB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTVIVNGAKGRMGSEAVNAINNDPALQLVGQCDVGDDLTQLIIASGAQVVVDLTAASAG
CEEEEEECCCCCCCHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEEEHHCCC
FNNTKTILNAGARPVVGTSGFQVEQVKELQALAAEKKLGGLIAPNFSVGAVLMMKFAAEA
CCCCHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCEECCCCCHHHHHHHHHHHHH
AKYLPDAEIIEAHSTQKEESPSGTGIRTAELIAQARIKNATAFNDTELLEGARGAELHGV
HHHCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCEECCE
KIHSIRLPGVVAQQTVFFGGLSETLKIEHNSLHRESFMPGICLACKQVVKRNELVYGLEH
EEEEEECCCHHHHHHHHCCCCCCEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
LMD
HCC
>Mature Secondary Structure
MVTVIVNGAKGRMGSEAVNAINNDPALQLVGQCDVGDDLTQLIIASGAQVVVDLTAASAG
CEEEEEECCCCCCCHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEEEHHCCC
FNNTKTILNAGARPVVGTSGFQVEQVKELQALAAEKKLGGLIAPNFSVGAVLMMKFAAEA
CCCCHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCEECCCCCHHHHHHHHHHHHH
AKYLPDAEIIEAHSTQKEESPSGTGIRTAELIAQARIKNATAFNDTELLEGARGAELHGV
HHHCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCEECCE
KIHSIRLPGVVAQQTVFFGGLSETLKIEHNSLHRESFMPGICLACKQVVKRNELVYGLEH
EEEEEECCCHHHHHHHHCCCCCCEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
LMD
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12397186 [H]