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The map label for this gene is rpoZ

Identifier: 119947226

GI number: 119947226

Start: 4440470

End: 4440745

Strand: Direct

Name: rpoZ

Synonym: Ping_3624

Alternate gene names: 119947226

Gene position: 4440470-4440745 (Clockwise)

Preceding gene: 119947225

Following gene: 119947227

Centisome position: 97.39

GC content: 40.22

Gene sequence:

>276_bases
ATGGCACGTGTAACCGTTGAAGATGCAGTAAATGTAGTTGGTAATCGCTTTGATCTTATCTTAATGGCATCTCGTCGAGC
TCGCCAGCTTGCAACTCAAGGTAAAACACCTTTAGTCGATCCGGAAAATGATAAACCTACGGTTATCGCTTTACGTGAAA
TTGAAGAAAATCTAATCACAAATGAATTGATGGATATTCAAGATCGTCAAGAAAAGCATGAAAAACAAACAGCAGAACTT
GCAGCTGTTGCCGCTATTGCTGAAGGTCGTGGTTAA

Upstream 100 bases:

>100_bases
ATTAGCTTAATAATTCCAACACGAAGTTTGTGGATCAATTGTAATTTTGAACGTATAATTAGCGCCCGTTTTTGGGTAAT
TAAATTTTTGGAGTTCAGCA

Downstream 100 bases:

>100_bases
TAACCAACCCTTTTAATAGTTCTAAAAAAACGCTGAGCATGAAAATGTTCAGCGTTTTTTTTATCGATAAGAAACGGGTC
TGAGATTGTGCTCAGTGTTT

Product: DNA-directed RNA polymerase, omega subunit

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 91; Mature: 90

Protein sequence:

>91_residues
MARVTVEDAVNVVGNRFDLILMASRRARQLATQGKTPLVDPENDKPTVIALREIEENLITNELMDIQDRQEKHEKQTAEL
AAVAAIAEGRG

Sequences:

>Translated_91_residues
MARVTVEDAVNVVGNRFDLILMASRRARQLATQGKTPLVDPENDKPTVIALREIEENLITNELMDIQDRQEKHEKQTAEL
AAVAAIAEGRG
>Mature_90_residues
ARVTVEDAVNVVGNRFDLILMASRRARQLATQGKTPLVDPENDKPTVIALREIEENLITNELMDIQDRQEKHEKQTAELA
AVAAIAEGRG

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

Organism=Escherichia coli, GI1790081, Length=90, Percent_Identity=66.6666666666667, Blast_Score=100, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_PSYIN (A1T0P2)

Other databases:

- EMBL:   CP000510
- RefSeq:   YP_944906.1
- STRING:   A1T0P2
- GeneID:   4625138
- GenomeReviews:   CP000510_GR
- KEGG:   pin:Ping_3624
- eggNOG:   COG1758
- HOGENOM:   HBG742204
- OMA:   EENDKYT
- PhylomeDB:   A1T0P2
- BioCyc:   PING357804:PING_3624-MONOMER
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 10095; Mature: 9963

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVTVEDAVNVVGNRFDLILMASRRARQLATQGKTPLVDPENDKPTVIALREIEENLIT
CCCCCHHHHHHHHCCCHHEEEECHHHHHHHHHCCCCCCCCCCCCCCCEEEHHHHHHHHHH
NELMDIQDRQEKHEKQTAELAAVAAIAEGRG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ARVTVEDAVNVVGNRFDLILMASRRARQLATQGKTPLVDPENDKPTVIALREIEENLIT
CCCCHHHHHHHHCCCHHEEEECHHHHHHHHHCCCCCCCCCCCCCCCEEEHHHHHHHHHH
NELMDIQDRQEKHEKQTAELAAVAAIAEGRG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA