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The map label for this gene is rnpA

Identifier: 119947211

GI number: 119947211

Start: 4424232

End: 4424588

Strand: Direct

Name: rnpA

Synonym: Ping_3609

Alternate gene names: 119947211

Gene position: 4424232-4424588 (Clockwise)

Preceding gene: 119947210

Following gene: 119947212

Centisome position: 97.03

GC content: 41.18

Gene sequence:

>357_bases
GTGGTGAATTATTCGTTTTCTCGGGAGTTACGTTTGTTAACTCCCGAAGATTTTAAACCTGTTTTTAAAAATGCTGTCCC
AGCAGTTTCCCCCTATCTGACTCTTTTAGCTCGAAAAAACACTCTAGATCACCCCCGCATCGGAATGGCTATTCCCAAAA
AGCACATAAAACGTGCCGTAGGGCGTAATAGAATTCGTCGCATTGTTAGAGAGCAATTTCGCCACCAACAACACCAACTC
CCTGCAATAGATATTGTTGTTATTGCTAAAGCGGGTATTGCGGATTTATCAAATCAAGAAATCAACAAAATATTGGATAA
ATTATGGCGGAAATTAGTGCAGCGGTGCAATGGGTAG

Upstream 100 bases:

>100_bases
CACGGTTTCCGAACTCGTATGGCGACTAAAAATGGTCGTAACGTACTAGCTCGTCGTCGTGCTAAAGGCCGCTCAAGCTT
AAGCGCATAATCTACCAGAC

Downstream 100 bases:

>100_bases
TAATCAAATTGATTCGCGGTTATCAAGTATTTATTAGCCCGATGATTGGCCCACGTTGTCGTTTTACGCCAACCTGTTCA
CAATATGCGATCGAAGCGAT

Product: ribonuclease P protein component

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5

Number of amino acids: Translated: 118; Mature: 118

Protein sequence:

>118_residues
MVNYSFSRELRLLTPEDFKPVFKNAVPAVSPYLTLLARKNTLDHPRIGMAIPKKHIKRAVGRNRIRRIVREQFRHQQHQL
PAIDIVVIAKAGIADLSNQEINKILDKLWRKLVQRCNG

Sequences:

>Translated_118_residues
MVNYSFSRELRLLTPEDFKPVFKNAVPAVSPYLTLLARKNTLDHPRIGMAIPKKHIKRAVGRNRIRRIVREQFRHQQHQL
PAIDIVVIAKAGIADLSNQEINKILDKLWRKLVQRCNG
>Mature_118_residues
MVNYSFSRELRLLTPEDFKPVFKNAVPAVSPYLTLLARKNTLDHPRIGMAIPKKHIKRAVGRNRIRRIVREQFRHQQHQL
PAIDIVVIAKAGIADLSNQEINKILDKLWRKLVQRCNG

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family

Homologues:

Organism=Escherichia coli, GI1790139, Length=118, Percent_Identity=50.8474576271186, Blast_Score=128, Evalue=1e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNPA_PSYIN (A1T0M7)

Other databases:

- EMBL:   CP000510
- RefSeq:   YP_944891.1
- ProteinModelPortal:   A1T0M7
- SMR:   A1T0M7
- STRING:   A1T0M7
- GeneID:   4625123
- GenomeReviews:   CP000510_GR
- KEGG:   pin:Ping_3609
- eggNOG:   COG0594
- HOGENOM:   HBG728160
- OMA:   LVIGKKS
- PhylomeDB:   A1T0M7
- BioCyc:   PING357804:PING_3609-MONOMER
- HAMAP:   MF_00227
- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- InterPro:   IPR020539
- Gene3D:   G3DSA:3.30.230.10
- ProDom:   PD003629
- TIGRFAMs:   TIGR00188

Pfam domain/function: PF00825 Ribonuclease_P; SSF54211 Ribosomal_S5_D2-typ_fold

EC number: =3.1.26.5

Molecular weight: Translated: 13699; Mature: 13699

Theoretical pI: Translated: 11.60; Mature: 11.60

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNYSFSRELRLLTPEDFKPVFKNAVPAVSPYLTLLARKNTLDHPRIGMAIPKKHIKRAV
CCCCCCCCCEECCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
GRNRIRRIVREQFRHQQHQLPAIDIVVIAKAGIADLSNQEINKILDKLWRKLVQRCNG
HHHHHHHHHHHHHHHHHHCCCHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVNYSFSRELRLLTPEDFKPVFKNAVPAVSPYLTLLARKNTLDHPRIGMAIPKKHIKRAV
CCCCCCCCCEECCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
GRNRIRRIVREQFRHQQHQLPAIDIVVIAKAGIADLSNQEINKILDKLWRKLVQRCNG
HHHHHHHHHHHHHHHHHHCCCHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA