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The map label for this gene is fliN [H]

Identifier: 119947194

GI number: 119947194

Start: 4407133

End: 4407495

Strand: Direct

Name: fliN [H]

Synonym: Ping_3592

Alternate gene names: 119947194

Gene position: 4407133-4407495 (Clockwise)

Preceding gene: 119947193

Following gene: 119947195

Centisome position: 96.66

GC content: 35.54

Gene sequence:

>363_bases
ATGAACCCCTTAGATAATGATTTAGATAATGAATTTGATTTAGATGATATGGATTTTGATCTGATTAATGATGTTAATGA
TATTAGTGATGCGCCCCCCTCCTCTTCAGCCAAAAAGGCAAAATCGCTGAGTTTTCTTAATGATATTCCGGTACATGTAA
CGGTCGAAGTCGGTGCCAAAACAGTGACTCTGAAGGAATTATTAGAAATTAAAAATGACTCGGTACTCATGCTCACTAAA
GAAAATGGAAAAGCGTTAGATATAAAAGTAAATGGTAAGTTATTTGCTTACGGTGAAGTGGTGGTTGCCAACGGACATTA
CGGTGTGAAAATCACTGATATTGTCAATAAAGATATTGACTGA

Upstream 100 bases:

>100_bases
CTTTTTTTTCAATTGGCGATACCACTGTTTTTAGGGGAAAAATTTCCACTCAAAATGAGCGCTTACTCTTTACCGTCAAT
GATCAACAAGAGAATGACCA

Downstream 100 bases:

>100_bases
TTGATGCGCGCTTTGTTAAATGTACTGGTGGTGCTCGCACTGTTATCACCCTTCAATTCTTTCGCCAGTGAAGGATTATC
GGTTTTATCGATAACCGATA

Product: surface presentation of antigens (SPOA) protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 120

Protein sequence:

>120_residues
MNPLDNDLDNEFDLDDMDFDLINDVNDISDAPPSSSAKKAKSLSFLNDIPVHVTVEVGAKTVTLKELLEIKNDSVLMLTK
ENGKALDIKVNGKLFAYGEVVVANGHYGVKITDIVNKDID

Sequences:

>Translated_120_residues
MNPLDNDLDNEFDLDDMDFDLINDVNDISDAPPSSSAKKAKSLSFLNDIPVHVTVEVGAKTVTLKELLEIKNDSVLMLTK
ENGKALDIKVNGKLFAYGEVVVANGHYGVKITDIVNKDID
>Mature_120_residues
MNPLDNDLDNEFDLDDMDFDLINDVNDISDAPPSSSAKKAKSLSFLNDIPVHVTVEVGAKTVTLKELLEIKNDSVLMLTK
ENGKALDIKVNGKLFAYGEVVVANGHYGVKITDIVNKDID

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side. Bacterial flagellum basal body (By similarity) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=72, Percent_Identity=50, Blast_Score=71, Evalue=3e-14,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 13134; Mature: 13134

Theoretical pI: Translated: 4.16; Mature: 4.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPLDNDLDNEFDLDDMDFDLINDVNDISDAPPSSSAKKAKSLSFLNDIPVHVTVEVGAK
CCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCE
TVTLKELLEIKNDSVLMLTKENGKALDIKVNGKLFAYGEVVVANGHYGVKITDIVNKDID
EEEHHHHHHCCCCCEEEEECCCCCEEEEEECCEEEEECEEEEECCCCCEEEEEECCCCCC
>Mature Secondary Structure
MNPLDNDLDNEFDLDDMDFDLINDVNDISDAPPSSSAKKAKSLSFLNDIPVHVTVEVGAK
CCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCE
TVTLKELLEIKNDSVLMLTKENGKALDIKVNGKLFAYGEVVVANGHYGVKITDIVNKDID
EEEHHHHHHCCCCCEEEEECCCCCEEEEEECCEEEEECEEEEECCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12522265 [H]