Click here to switch to the map view.

The map label for this gene is priB [H]

Identifier: 119947023

GI number: 119947023

Start: 4226556

End: 4226846

Strand: Direct

Name: priB [H]

Synonym: Ping_3420

Alternate gene names: 119947023

Gene position: 4226556-4226846 (Clockwise)

Preceding gene: 119947022

Following gene: 119947024

Centisome position: 92.7

GC content: 37.11

Gene sequence:

>291_bases
TTGCGACTTTCGGGTGTAGTAACTGAAAAGCCTACATTTAAAAAAAGTCCTAGCGGTTTACAACACTGTAATTTAGTGAT
TGAACATCGTTCTATGCAAGAAGAGGCTGAATTACCACGCAACGTTTTTTGTTATATGCCCGTTGCAGCAAGTGGAATAC
TTGCCAGTCAGTTAAAAGATAAATTATCGAAAGGGATGCAAATAAGAGTAAGTGGTTTTATCACTTTTCATCAAAGCGCA
AATAAGCTTGGAAAACTCGTGTTGCATGCTCAGTACATAGAACAAATTTGA

Upstream 100 bases:

>100_bases
GTGTTGAACGTGCTCCTCGTGCTCCACGTCCAGAAGTGAAAGCAGAACCAGAAGCAGAAGCAACAGCTGAAGCATAAGCT
ACTTAGTGACTGATAACTTT

Downstream 100 bases:

>100_bases
GGAAATACCATGGCTCGTTACTTCCGCCGTCGTAAGTTCTGTCGTTTCACCGCTGAAGGTGTTAGCGAAATTGATTACAA
AGACGTTGTTACGTTAAAAA

Product: single-strand binding protein/primosomal replication protein n

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 96; Mature: 96

Protein sequence:

>96_residues
MRLSGVVTEKPTFKKSPSGLQHCNLVIEHRSMQEEAELPRNVFCYMPVAASGILASQLKDKLSKGMQIRVSGFITFHQSA
NKLGKLVLHAQYIEQI

Sequences:

>Translated_96_residues
MRLSGVVTEKPTFKKSPSGLQHCNLVIEHRSMQEEAELPRNVFCYMPVAASGILASQLKDKLSKGMQIRVSGFITFHQSA
NKLGKLVLHAQYIEQI
>Mature_96_residues
MRLSGVVTEKPTFKKSPSGLQHCNLVIEHRSMQEEAELPRNVFCYMPVAASGILASQLKDKLSKGMQIRVSGFITFHQSA
NKLGKLVLHAQYIEQI

Specific function: Binds single-stranded DNA at the primosome assembly site (PAS) [H]

COG id: COG2965

COG function: function code L; Primosomal replication protein N

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

Organism=Escherichia coli, GI1790645, Length=94, Percent_Identity=47.8723404255319, Blast_Score=90, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 10741; Mature: 10741

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLSGVVTEKPTFKKSPSGLQHCNLVIEHRSMQEEAELPRNVFCYMPVAASGILASQLKD
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHCCCCCEEEECCHHHHHHHHHHHHH
KLSKGMQIRVSGFITFHQSANKLGKLVLHAQYIEQI
HHHCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRLSGVVTEKPTFKKSPSGLQHCNLVIEHRSMQEEAELPRNVFCYMPVAASGILASQLKD
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHCCCCCEEEECCHHHHHHHHHHHHH
KLSKGMQIRVSGFITFHQSANKLGKLVLHAQYIEQI
HHHCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12620739 [H]