Click here to switch to the map view.

The map label for this gene is exbD [C]

Identifier: 119946951

GI number: 119946951

Start: 4134606

End: 4135010

Strand: Direct

Name: exbD [C]

Synonym: Ping_3345

Alternate gene names: 119946951

Gene position: 4134606-4135010 (Clockwise)

Preceding gene: 119946950

Following gene: 119946952

Centisome position: 90.68

GC content: 33.58

Gene sequence:

>405_bases
ATGAAATTAAGCAAGAAAAATTTTCAACAGCCTGCCCGATTTGAGTTGTTACCCCTGCTTGATGTGATTTTTTTATTACT
GATTTTTTTTGTTTTTGTTATGCTTAAAATGACTATGCAAAGTAGTATTAATATTGAATTACCGCAGTTAGTTGATAGCC
AGCAACAAACTGAGGAGCTGTTAGTTATTAGTATAAACAGCAAAAATCAACTTTTTATTAATGAGGAAGTAACCACTGAA
GAGCTTATGTTGGCGCAAGTTATTAACTTGCAAAAAGACAATAAATTACCCATATTAATACGTGGTGACAAAAAATCCGA
TTTAGGTGTCGCCTTATCAATTTTGGATAAACTACGCTTGTCCGGATTCCATCATGTTGCTTTTGCAACCGACAAAGACC
AATGA

Upstream 100 bases:

>100_bases
GTAAAAAGAAAGAGTATTTCAGCATTGATGAGCTTAAATTACAAAAGCAGAAAGAGACTGCTCGGCAGGTACAAAAAGAG
TCTTTCAGGAATAAAACGCG

Downstream 100 bases:

>100_bases
AAGTGACGGTGGTGCATGAAAATAATTAGCTCTTATTTCCCTTTTCTTATTATCAGCCTTGTTTTCTATGGTTTTATTTT
TCTTTATCTTGATCAACCCA

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MKLSKKNFQQPARFELLPLLDVIFLLLIFFVFVMLKMTMQSSINIELPQLVDSQQQTEELLVISINSKNQLFINEEVTTE
ELMLAQVINLQKDNKLPILIRGDKKSDLGVALSILDKLRLSGFHHVAFATDKDQ

Sequences:

>Translated_134_residues
MKLSKKNFQQPARFELLPLLDVIFLLLIFFVFVMLKMTMQSSINIELPQLVDSQQQTEELLVISINSKNQLFINEEVTTE
ELMLAQVINLQKDNKLPILIRGDKKSDLGVALSILDKLRLSGFHHVAFATDKDQ
>Mature_134_residues
MKLSKKNFQQPARFELLPLLDVIFLLLIFFVFVMLKMTMQSSINIELPQLVDSQQQTEELLVISINSKNQLFINEEVTTE
ELMLAQVINLQKDNKLPILIRGDKKSDLGVALSILDKLRLSGFHHVAFATDKDQ

Specific function: Involved In The Tonb-Dependent Energy-Dependent Transport Of Various Receptor-Bound Substrates. [C]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15370; Mature: 15370

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLSKKNFQQPARFELLPLLDVIFLLLIFFVFVMLKMTMQSSINIELPQLVDSQQQTEEL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHCCCCCCCEE
LVISINSKNQLFINEEVTTEELMLAQVINLQKDNKLPILIRGDKKSDLGVALSILDKLRL
EEEEECCCCEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
SGFHHVAFATDKDQ
CCCEEEEEECCCCC
>Mature Secondary Structure
MKLSKKNFQQPARFELLPLLDVIFLLLIFFVFVMLKMTMQSSINIELPQLVDSQQQTEEL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHCCCCCCCEE
LVISINSKNQLFINEEVTTEELMLAQVINLQKDNKLPILIRGDKKSDLGVALSILDKLRL
EEEEECCCCEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
SGFHHVAFATDKDQ
CCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]