| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is mltF [H]
Identifier: 119946925
GI number: 119946925
Start: 4100625
End: 4102781
Strand: Direct
Name: mltF [H]
Synonym: Ping_3319
Alternate gene names: 119946925
Gene position: 4100625-4102781 (Clockwise)
Preceding gene: 119946921
Following gene: 119946928
Centisome position: 89.93
GC content: 43.86
Gene sequence:
>2157_bases ATGGATCTAAAGATGCCTTTTATAAAATTCAAGCAATCAATAGCATGGCTCTCTTTTAGTTTTTTATTGTTCTTACTAAC TGCCTGCAACCCTTTTTTACAGACCACTCACTTAGAAAATATTCAAAAGCGGGGTGATATTATGATGGGCACGATCAATG GATCCCTGACTTATAGTTTTGACGGCAGTGTTTACAGCGGTTTTGACTATGAACTGGGCAAACAGCTCGCTGATGAGCTG AACGTTAAATTAACCATCAAAGAATACGCGACATTCGAAGCGTTATTTAAGGCTTTAGATAATAATAAAGTGGATTTTCT CGCTGCGGGACTGACATTAACCCCTAAAAGAGCGCAAAAATATCGCAGCTCCCCTCCTTATTATTTTGCATCTCAAAAAT TAGTTTATCGCAAGGGCAGTTATCGTCCTCGGGAAGCAACAGACATTAATGCCCCTGTCTTTGTTCTTAAAGATAGCAGC CATGAGGAAACACTGGACAAATTGTTAAGCGCAATGCCTGAACTTGAAGTGAACATCTTAGAAAATGCAGATCAGGAGAC TTTACTGCGAAAAGTCGCCGAAGAAGAGATTACCTTTGCCATTGTCGACAGCTCGACACTGGCGCAAAAACAACTTTATT ATCCGGTTTTAACAGAAGCCTTTACGATCTCGAAAAAGCAACCCGTCGCCTGGTTATTGAAGCGTCACCAGGATGATACG CTGTACTCTGCGATCATTGAATTTATGGGTAACAGATACAATGACCAGACCATCGCCAAGCTTGAAGAAAAATATTTTGG TCACGTCAGGCAGTTTGATTTTGTTGATACAAAAGTATTTTTACGACGCAACCAAAGCATCCTGCCTGAATTTGAAAGTT TATTTAAAAAACATGCCACATCTGAAGTGGATTGGTTATTACTCGCCGCGGTCAGTTATCAGGAATCGCATTGGGATCCA AAAGCCGAATCACCCACAGGTGTTCGCGGCATGATGATGTTAACCCTTGATACGGCAGATTATATAGGTATAAAAAACAG ATTAGATCCCGCTCAAAGTATCAAGGGAGGTGCTGACTATCTAACAAAGCTCATTAAACGTCTGCCCAATAGTATTCCTG ATGATGAAAAAATCTGGTTTGCATTAGCCAGTTATAACCTTGGTTACGGGCATGTAATGGATGCCCGGCGGATCACTCTG AAGAAAAAACAAAATCCTGATGCATGGTCAGATGTTAAAGCAAACTTGCCACTGCTTCATGAAAAAAAATGGTATAGCCA ATCTAGATACGGTTATGCGCGTGGGCGGGAAGCCCAACATTATGTCAACAATATCCGTCAATATTTAAAAACATTAACCT GGTTTATTGCCGAGAGAACAAAACAGGAGGCTGAACAAAAAATCGAACTGGCAGTACAAGCCAAGCTTGCAGCTGAACAA AAACGGGCAGCAAAAGCCAAGCTCGAAGCTGAACAAAAAAGTAGTCCAGCAGAAAAAGCCAAGCTGGAAGCGCAGCAAAA AATCGAACTGGCAGAAAAAGCCGAGCAGGAGGCGCAGCAAAAAAGCAGACTGGCAGAAAAAGCCAAGCAGGAGGCGCAGC AAAAAAGTAGACTGGCAGAAAAAGCCGAGCAGGAGTCTGAACAAAAAATTGAACTGGCAGAAAAAGCCAAGCTAGAAGCT GAACAACAAATCGAACTGGCCGCAAAAGTTAAGCTGGAAGTTGAACAACAAATCGAACTGGCCGCAAAAGCCAAATTGGA AGCTGAACAACAAATCGAACTGGCCGCAAAAGCCAAGCAGGAGGCTGAACAAAAAATCGAACTGGCCGCAAAAGCTAAGC AGGAGGCTGAACAAAAAATCGAACTGGCCGCAAAAGCCAAGCAGGAGGCTGAACAAAAAATCGAACTGGCCGCAAAAGCC AAGCAGGAGGCTGAACAAGAACTAGTGGCTAAAGCCAAACTGGAGGATGAGCAGGAACTGGGGGCTAAAGCCCTACTTGC AGCTGAACAGGAACCGACAGCGGAACAGGAACCAGCAACTGAACAGGAGCCGGCAGCTGAACAGGAGCCGGCAGCTCAAG AAAAGAAACAGGCAGAGACCAAAGAAGTGCAGGAGACGGAAGTCGCGACAGCAGATATAACCGCGGTCAGCAAATAA
Upstream 100 bases:
>100_bases AAATAGAAACCCTCTATAGTCGAACTTAATTTATTTTTGATAATGTTATCTTCGCAACATTCACCTGGAAATCCAGACGA CTCCACTCAAAAATCATTAT
Downstream 100 bases:
>100_bases CAGGCAAGTAAAAACAGAGAAGCTGAATAATGTCAGCGCTGCGGCGGGCCCTTCAGACCTAAACTACTTGAAGATTCAGA TTCAGGTAGTTTGGGCCTAA
Product: lytic transglycosylase, catalytic
Products: NA
Alternate protein names: Murein lyase F [H]
Number of amino acids: Translated: 718; Mature: 718
Protein sequence:
>718_residues MDLKMPFIKFKQSIAWLSFSFLLFLLTACNPFLQTTHLENIQKRGDIMMGTINGSLTYSFDGSVYSGFDYELGKQLADEL NVKLTIKEYATFEALFKALDNNKVDFLAAGLTLTPKRAQKYRSSPPYYFASQKLVYRKGSYRPREATDINAPVFVLKDSS HEETLDKLLSAMPELEVNILENADQETLLRKVAEEEITFAIVDSSTLAQKQLYYPVLTEAFTISKKQPVAWLLKRHQDDT LYSAIIEFMGNRYNDQTIAKLEEKYFGHVRQFDFVDTKVFLRRNQSILPEFESLFKKHATSEVDWLLLAAVSYQESHWDP KAESPTGVRGMMMLTLDTADYIGIKNRLDPAQSIKGGADYLTKLIKRLPNSIPDDEKIWFALASYNLGYGHVMDARRITL KKKQNPDAWSDVKANLPLLHEKKWYSQSRYGYARGREAQHYVNNIRQYLKTLTWFIAERTKQEAEQKIELAVQAKLAAEQ KRAAKAKLEAEQKSSPAEKAKLEAQQKIELAEKAEQEAQQKSRLAEKAKQEAQQKSRLAEKAEQESEQKIELAEKAKLEA EQQIELAAKVKLEVEQQIELAAKAKLEAEQQIELAAKAKQEAEQKIELAAKAKQEAEQKIELAAKAKQEAEQKIELAAKA KQEAEQELVAKAKLEDEQELGAKALLAAEQEPTAEQEPATEQEPAAEQEPAAQEKKQAETKEVQETEVATADITAVSK
Sequences:
>Translated_718_residues MDLKMPFIKFKQSIAWLSFSFLLFLLTACNPFLQTTHLENIQKRGDIMMGTINGSLTYSFDGSVYSGFDYELGKQLADEL NVKLTIKEYATFEALFKALDNNKVDFLAAGLTLTPKRAQKYRSSPPYYFASQKLVYRKGSYRPREATDINAPVFVLKDSS HEETLDKLLSAMPELEVNILENADQETLLRKVAEEEITFAIVDSSTLAQKQLYYPVLTEAFTISKKQPVAWLLKRHQDDT LYSAIIEFMGNRYNDQTIAKLEEKYFGHVRQFDFVDTKVFLRRNQSILPEFESLFKKHATSEVDWLLLAAVSYQESHWDP KAESPTGVRGMMMLTLDTADYIGIKNRLDPAQSIKGGADYLTKLIKRLPNSIPDDEKIWFALASYNLGYGHVMDARRITL KKKQNPDAWSDVKANLPLLHEKKWYSQSRYGYARGREAQHYVNNIRQYLKTLTWFIAERTKQEAEQKIELAVQAKLAAEQ KRAAKAKLEAEQKSSPAEKAKLEAQQKIELAEKAEQEAQQKSRLAEKAKQEAQQKSRLAEKAEQESEQKIELAEKAKLEA EQQIELAAKVKLEVEQQIELAAKAKLEAEQQIELAAKAKQEAEQKIELAAKAKQEAEQKIELAAKAKQEAEQKIELAAKA KQEAEQELVAKAKLEDEQELGAKALLAAEQEPTAEQEPATEQEPAAEQEPAAQEKKQAETKEVQETEVATADITAVSK >Mature_718_residues MDLKMPFIKFKQSIAWLSFSFLLFLLTACNPFLQTTHLENIQKRGDIMMGTINGSLTYSFDGSVYSGFDYELGKQLADEL NVKLTIKEYATFEALFKALDNNKVDFLAAGLTLTPKRAQKYRSSPPYYFASQKLVYRKGSYRPREATDINAPVFVLKDSS HEETLDKLLSAMPELEVNILENADQETLLRKVAEEEITFAIVDSSTLAQKQLYYPVLTEAFTISKKQPVAWLLKRHQDDT LYSAIIEFMGNRYNDQTIAKLEEKYFGHVRQFDFVDTKVFLRRNQSILPEFESLFKKHATSEVDWLLLAAVSYQESHWDP KAESPTGVRGMMMLTLDTADYIGIKNRLDPAQSIKGGADYLTKLIKRLPNSIPDDEKIWFALASYNLGYGHVMDARRITL KKKQNPDAWSDVKANLPLLHEKKWYSQSRYGYARGREAQHYVNNIRQYLKTLTWFIAERTKQEAEQKIELAVQAKLAAEQ KRAAKAKLEAEQKSSPAEKAKLEAQQKIELAEKAEQEAQQKSRLAEKAKQEAQQKSRLAEKAEQESEQKIELAEKAKLEA EQQIELAAKVKLEVEQQIELAAKAKLEAEQQIELAAKAKQEAEQKIELAAKAKQEAEQKIELAAKAKQEAEQKIELAAKA KQEAEQELVAKAKLEDEQELGAKALLAAEQEPTAEQEPATEQEPAAEQEPAAQEKKQAETKEVQETEVATADITAVSK
Specific function: Murein-degrading enzyme that degrades murein glycan strands and insoluble, high-molecular weight murein sacculi, with the concomitant formation of a 1,6-anhydromuramoyl product. Lytic transglycosylases (LTs) play an integral role in the metabolism of the
COG id: COG4623
COG function: function code M; Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein
Gene ontology:
Cell location: Cell outer membrane; Peripheral membrane protein. Note=Attached to the inner leaflet of the outer membrane [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transglycosylase slt family [H]
Homologues:
Organism=Escherichia coli, GI171474010, Length=438, Percent_Identity=44.7488584474886, Blast_Score=382, Evalue=1e-107,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008258 - InterPro: IPR001638 - InterPro: IPR000189 [H]
Pfam domain/function: PF00497 SBP_bac_3; PF01464 SLT [H]
EC number: NA
Molecular weight: Translated: 81501; Mature: 81501
Theoretical pI: Translated: 5.62; Mature: 5.62
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00922 TRANSGLYCOSYLASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLKMPFIKFKQSIAWLSFSFLLFLLTACNPFLQTTHLENIQKRGDIMMGTINGSLTYSF CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEEECCEEEEEE DGSVYSGFDYELGKQLADELNVKLTIKEYATFEALFKALDNNKVDFLAAGLTLTPKRAQK CCCEECCCCHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHCCCCEEEEEECCEECHHHHHH YRSSPPYYFASQKLVYRKGSYRPREATDINAPVFVLKDSSHEETLDKLLSAMPELEVNIL HCCCCCEEECCCCCEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEHHH ENADQETLLRKVAEEEITFAIVDSSTLAQKQLYYPVLTEAFTISKKQPVAWLLKRHQDDT CCCCHHHHHHHHHHHCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHH LYSAIIEFMGNRYNDQTIAKLEEKYFGHVRQFDFVDTKVFLRRNQSILPEFESLFKKHAT HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHCC SEVDWLLLAAVSYQESHWDPKAESPTGVRGMMMLTLDTADYIGIKNRLDPAQSIKGGADY CCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCHHHHCCCCCCCHHHHCCCCHHH LTKLIKRLPNSIPDDEKIWFALASYNLGYGHVMDARRITLKKKQNPDAWSDVKANLPLLH HHHHHHHCCCCCCCCCCEEEEEECCCCCCCHHCCCHHHHHHCCCCCCCHHHHCCCCCCCC EKKWYSQSRYGYARGREAQHYVNNIRQYLKTLTWFIAERTKQEAEQKIELAVQAKLAAEQ CHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KRAAKAKLEAEQKSSPAEKAKLEAQQKIELAEKAEQEAQQKSRLAEKAKQEAQQKSRLAE HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KAEQESEQKIELAEKAKLEAEQQIELAAKVKLEVEQQIELAAKAKLEAEQQIELAAKAKQ HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH EAEQKIELAAKAKQEAEQKIELAAKAKQEAEQKIELAAKAKQEAEQELVAKAKLEDEQEL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH GAKALLAAEQEPTAEQEPATEQEPAAEQEPAAQEKKQAETKEVQETEVATADITAVSK CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MDLKMPFIKFKQSIAWLSFSFLLFLLTACNPFLQTTHLENIQKRGDIMMGTINGSLTYSF CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEEECCEEEEEE DGSVYSGFDYELGKQLADELNVKLTIKEYATFEALFKALDNNKVDFLAAGLTLTPKRAQK CCCEECCCCHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHCCCCEEEEEECCEECHHHHHH YRSSPPYYFASQKLVYRKGSYRPREATDINAPVFVLKDSSHEETLDKLLSAMPELEVNIL HCCCCCEEECCCCCEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEHHH ENADQETLLRKVAEEEITFAIVDSSTLAQKQLYYPVLTEAFTISKKQPVAWLLKRHQDDT CCCCHHHHHHHHHHHCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHH LYSAIIEFMGNRYNDQTIAKLEEKYFGHVRQFDFVDTKVFLRRNQSILPEFESLFKKHAT HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHCC SEVDWLLLAAVSYQESHWDPKAESPTGVRGMMMLTLDTADYIGIKNRLDPAQSIKGGADY CCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCHHHHCCCCCCCHHHHCCCCHHH LTKLIKRLPNSIPDDEKIWFALASYNLGYGHVMDARRITLKKKQNPDAWSDVKANLPLLH HHHHHHHCCCCCCCCCCEEEEEECCCCCCCHHCCCHHHHHHCCCCCCCHHHHCCCCCCCC EKKWYSQSRYGYARGREAQHYVNNIRQYLKTLTWFIAERTKQEAEQKIELAVQAKLAAEQ CHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KRAAKAKLEAEQKSSPAEKAKLEAQQKIELAEKAEQEAQQKSRLAEKAKQEAQQKSRLAE HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KAEQESEQKIELAEKAKLEAEQQIELAAKVKLEVEQQIELAAKAKLEAEQQIELAAKAKQ HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH EAEQKIELAAKAKQEAEQKIELAAKAKQEAEQKIELAAKAKQEAEQELVAKAKLEDEQEL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH GAKALLAAEQEPTAEQEPATEQEPAAEQEPAAQEKKQAETKEVQETEVATADITAVSK CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA