BacMap

Definition	Psychromonas ingrahamii 37, complete genome.
Accession	NC_008709
Length	4,559,598

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The map label for this gene is ybbO [H]

Identifier: 119946761

GI number: 119946761

Start: 3883629

End: 3884489

Strand: Direct

Name: ybbO [H]

Synonym: Ping_3154

Alternate gene names: 119946761

Gene position: 3883629-3884489 (Clockwise)

Preceding gene: 119946758

Following gene: 119946762

Centisome position: 85.17

GC content: 42.39

Gene sequence:

>861_bases
ATGACAACACACTCACCTTCTACGACTAAAGTCCTTATCACAGGTTGCTCAACGGGCATCGGTTATCATTGTGCCAAACA
CCTACAATCAATGGGCTATCAGGTAATTGCTACGTGTCGAAAGCAAAAAGATGTCAGGCGATTAAACAATCAAGGCCTTA
CCTGCCTGCAGCTCGATTTAGCCGATAGCCAATCAATCAAATCTGCTTTAGAGAAAGTCCTTTTAGAAACCCAAGGAAAA
ATCGACCTGTTATTTAACAATGGCGCATTCGGGCTACCGGGTGCCGTTGAAGATTTAAGCCGTCAAGCAATGGAGTATCA
GTTTCAAACCAATGTGTTTGGTACCCAGGAATTGACCAATTTAGTTGTGCCTATTATGCGTAAACAAGGTGGCGGAAAAA
TTATTTATAACAGTTCTATTTTAGGCTTTGCAGCCATGCAGTATCGTGGTGCATATAATGCCAGCAAATTTGCAATTGAA
GGCTTTGCGGACACCTTAAGGCTTGAAGTTAAAAAAGATAATATTAAGGTGAGTTTAATTGAACCGGGAGCAATTATTTC
TGATTTCAGAAAAAATGCCTTCGAGCAGTTTAAGCGTTGGATTCCTCGACAAGGCAGCGCCCATCAAAGCAGTTATGAAG
CCATGGTCACTCGCTTAGAAACCGTTGGACCAAGCGCACCCTTTACGCTAGGGCCTGAAGCCGTGACCAAATGTGTGCTA
CATGTTTTGCAAAAATCACAGCCTAAAATTCGCTATAGAGTTACCGTACCCACTATCGCTTTTGCATTGTTAAAGCGATT
TTTACCGAACCGACTTTTAGACATTCTACTTATTAAAGCGGGTGGAAACGGTAAGCGTTAG

Upstream 100 bases:

>100_bases
AATTTTAACCAGCAAGGATAATCACCTTTTTAGTTCTTTTGGTATTAACAAGTTAAATTTCTTATCATCCATTTACCCTA
TTAAATTGAGAGTCTTACAC

Downstream 100 bases:

>100_bases
TCTGTAAAGACCATTACGATAAATCGTGGACATATATGGACGCTCCACATCTGTCCAGCAATTAGCCTTTAGTCAATTAG
ATGGCTGTCCAACTATTTTG

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 285

Protein sequence:

>286_residues
MTTHSPSTTKVLITGCSTGIGYHCAKHLQSMGYQVIATCRKQKDVRRLNNQGLTCLQLDLADSQSIKSALEKVLLETQGK
IDLLFNNGAFGLPGAVEDLSRQAMEYQFQTNVFGTQELTNLVVPIMRKQGGGKIIYNSSILGFAAMQYRGAYNASKFAIE
GFADTLRLEVKKDNIKVSLIEPGAIISDFRKNAFEQFKRWIPRQGSAHQSSYEAMVTRLETVGPSAPFTLGPEAVTKCVL
HVLQKSQPKIRYRVTVPTIAFALLKRFLPNRLLDILLIKAGGNGKR

Sequences:

>Translated_286_residues
MTTHSPSTTKVLITGCSTGIGYHCAKHLQSMGYQVIATCRKQKDVRRLNNQGLTCLQLDLADSQSIKSALEKVLLETQGK
IDLLFNNGAFGLPGAVEDLSRQAMEYQFQTNVFGTQELTNLVVPIMRKQGGGKIIYNSSILGFAAMQYRGAYNASKFAIE
GFADTLRLEVKKDNIKVSLIEPGAIISDFRKNAFEQFKRWIPRQGSAHQSSYEAMVTRLETVGPSAPFTLGPEAVTKCVL
HVLQKSQPKIRYRVTVPTIAFALLKRFLPNRLLDILLIKAGGNGKR
>Mature_285_residues
TTHSPSTTKVLITGCSTGIGYHCAKHLQSMGYQVIATCRKQKDVRRLNNQGLTCLQLDLADSQSIKSALEKVLLETQGKI
DLLFNNGAFGLPGAVEDLSRQAMEYQFQTNVFGTQELTNLVVPIMRKQGGGKIIYNSSILGFAAMQYRGAYNASKFAIEG
FADTLRLEVKKDNIKVSLIEPGAIISDFRKNAFEQFKRWIPRQGSAHQSSYEAMVTRLETVGPSAPFTLGPEAVTKCVLH
VLQKSQPKIRYRVTVPTIAFALLKRFLPNRLLDILLIKAGGNGKR

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7657478, Length=262, Percent_Identity=32.0610687022901, Blast_Score=127, Evalue=1e-29,
Organism=Homo sapiens, GI223718074, Length=274, Percent_Identity=31.3868613138686, Blast_Score=121, Evalue=7e-28,
Organism=Homo sapiens, GI44680136, Length=292, Percent_Identity=27.7397260273973, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI44680133, Length=292, Percent_Identity=27.7397260273973, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI17738292, Length=292, Percent_Identity=27.7397260273973, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI150247226, Length=282, Percent_Identity=28.3687943262411, Blast_Score=101, Evalue=6e-22,
Organism=Homo sapiens, GI20149619, Length=196, Percent_Identity=32.6530612244898, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI19743808, Length=288, Percent_Identity=28.4722222222222, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI50726952, Length=286, Percent_Identity=28.3216783216783, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI4504503, Length=185, Percent_Identity=32.4324324324324, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI32483357, Length=201, Percent_Identity=31.3432835820896, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI40548397, Length=279, Percent_Identity=27.2401433691756, Blast_Score=91, Evalue=9e-19,
Organism=Homo sapiens, GI214010158, Length=279, Percent_Identity=27.2401433691756, Blast_Score=91, Evalue=9e-19,
Organism=Homo sapiens, GI214010156, Length=279, Percent_Identity=27.2401433691756, Blast_Score=91, Evalue=9e-19,
Organism=Homo sapiens, GI22758144, Length=279, Percent_Identity=27.2401433691756, Blast_Score=91, Evalue=9e-19,
Organism=Homo sapiens, GI7706318, Length=195, Percent_Identity=33.3333333333333, Blast_Score=91, Evalue=9e-19,
Organism=Homo sapiens, GI22507405, Length=290, Percent_Identity=29.6551724137931, Blast_Score=88, Evalue=7e-18,
Organism=Homo sapiens, GI119392083, Length=200, Percent_Identity=31.5, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI126723191, Length=191, Percent_Identity=30.8900523560209, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI32455239, Length=191, Percent_Identity=31.9371727748691, Blast_Score=79, Evalue=6e-15,
Organism=Homo sapiens, GI5031765, Length=191, Percent_Identity=31.9371727748691, Blast_Score=79, Evalue=6e-15,
Organism=Homo sapiens, GI157739938, Length=277, Percent_Identity=22.3826714801444, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI33667109, Length=187, Percent_Identity=30.4812834224599, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI38348362, Length=177, Percent_Identity=25.9887005649718, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI5031737, Length=187, Percent_Identity=30.4812834224599, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI4503817, Length=182, Percent_Identity=28.021978021978, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI38424085, Length=178, Percent_Identity=25.8426966292135, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI126723750, Length=205, Percent_Identity=28.2926829268293, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI7705925, Length=183, Percent_Identity=26.2295081967213, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI40254992, Length=197, Percent_Identity=25.3807106598985, Blast_Score=68, Evalue=9e-12,
Organism=Escherichia coli, GI1786701, Length=267, Percent_Identity=41.5730337078652, Blast_Score=207, Evalue=8e-55,
Organism=Escherichia coli, GI1787335, Length=186, Percent_Identity=29.5698924731183, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87082100, Length=178, Percent_Identity=29.7752808988764, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788459, Length=182, Percent_Identity=29.6703296703297, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787820, Length=180, Percent_Identity=30, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1786812, Length=217, Percent_Identity=25.8064516129032, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787905, Length=188, Percent_Identity=29.2553191489362, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787526, Length=193, Percent_Identity=26.9430051813472, Blast_Score=61, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17557780, Length=290, Percent_Identity=26.2068965517241, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17560676, Length=206, Percent_Identity=27.6699029126214, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI193210355, Length=280, Percent_Identity=27.8571428571429, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI71997402, Length=199, Percent_Identity=31.6582914572864, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17561402, Length=182, Percent_Identity=32.4175824175824, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17570069, Length=199, Percent_Identity=30.6532663316583, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17532177, Length=207, Percent_Identity=28.5024154589372, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI115534660, Length=179, Percent_Identity=26.8156424581006, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17560332, Length=196, Percent_Identity=30.1020408163265, Blast_Score=64, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI72001658, Length=235, Percent_Identity=29.3617021276596, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6322067, Length=275, Percent_Identity=28.3636363636364, Blast_Score=81, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6323882, Length=191, Percent_Identity=31.9371727748691, Blast_Score=78, Evalue=1e-15,
Organism=Drosophila melanogaster, GI21358495, Length=276, Percent_Identity=31.1594202898551, Blast_Score=108, Evalue=6e-24,
Organism=Drosophila melanogaster, GI28571526, Length=188, Percent_Identity=29.2553191489362, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI21355319, Length=195, Percent_Identity=28.7179487179487, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24580925, Length=198, Percent_Identity=28.7878787878788, Blast_Score=81, Evalue=9e-16,
Organism=Drosophila melanogaster, GI24651139, Length=298, Percent_Identity=27.1812080536913, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24643142, Length=180, Percent_Identity=30, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI21357041, Length=194, Percent_Identity=28.8659793814433, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI21356301, Length=205, Percent_Identity=26.8292682926829, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI28571387, Length=195, Percent_Identity=29.7435897435897, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI45553409, Length=202, Percent_Identity=27.7227722772277, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24647948, Length=202, Percent_Identity=27.7227722772277, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24647946, Length=202, Percent_Identity=27.7227722772277, Blast_Score=71, Evalue=9e-13,
Organism=Drosophila melanogaster, GI116007236, Length=195, Percent_Identity=27.1794871794872, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24641232, Length=202, Percent_Identity=26.7326732673267, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI19922066, Length=309, Percent_Identity=22.3300970873786, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24644339, Length=211, Percent_Identity=26.0663507109005, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI23397609, Length=209, Percent_Identity=25.8373205741627, Blast_Score=64, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 31639; Mature: 31508

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTHSPSTTKVLITGCSTGIGYHCAKHLQSMGYQVIATCRKQKDVRRLNNQGLTCLQLDL
CCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEEC
ADSQSIKSALEKVLLETQGKIDLLFNNGAFGLPGAVEDLSRQAMEYQFQTNVFGTQELTN
CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHH
LVVPIMRKQGGGKIIYNSSILGFAAMQYRGAYNASKFAIEGFADTLRLEVKKDNIKVSLI
HHHHHHHCCCCCEEEECCCHHHHHHHHHCCCCCCCHHHHHCCHHHEEEEEEECCEEEEEE
EPGAIISDFRKNAFEQFKRWIPRQGSAHQSSYEAMVTRLETVGPSAPFTLGPEAVTKCVL
CCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
HVLQKSQPKIRYRVTVPTIAFALLKRFLPNRLLDILLIKAGGNGKR
HHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHEEEEECCCCCCC
>Mature Secondary Structure 
TTHSPSTTKVLITGCSTGIGYHCAKHLQSMGYQVIATCRKQKDVRRLNNQGLTCLQLDL
CCCCCCCCEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEEC
ADSQSIKSALEKVLLETQGKIDLLFNNGAFGLPGAVEDLSRQAMEYQFQTNVFGTQELTN
CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHH
LVVPIMRKQGGGKIIYNSSILGFAAMQYRGAYNASKFAIEGFADTLRLEVKKDNIKVSLI
HHHHHHHCCCCCEEEECCCHHHHHHHHHCCCCCCCHHHHHCCHHHEEEEEEECCEEEEEE
EPGAIISDFRKNAFEQFKRWIPRQGSAHQSSYEAMVTRLETVGPSAPFTLGPEAVTKCVL
CCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
HVLQKSQPKIRYRVTVPTIAFALLKRFLPNRLLDILLIKAGGNGKR
HHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]