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The map label for this gene is ydaM [H]

Identifier: 119946701

GI number: 119946701

Start: 3784556

End: 3785785

Strand: Direct

Name: ydaM [H]

Synonym: Ping_3083

Alternate gene names: 119946701

Gene position: 3784556-3785785 (Clockwise)

Preceding gene: 119946696

Following gene: 119946702

Centisome position: 83.0

GC content: 36.99

Gene sequence:

>1230_bases
ATGATTAACAAAGACGTCACACAGGAAGCCTGTATTGATTATGAGCTAACAGTATCAAATGATGCTAATGAACAGACGGA
ACGAAGAAAATCTGTCTCATCAACCAACATAACCCGCTCATTTTTTAGCTTAGGCCGTACTGCGTTGACAGATCTACTCT
CTACTAATCTGCATTCTAAAGACTTTGTTAATACTCGTACCAGCTTTATAACTTCTCGACTTTGGCTGATATGTATATTT
TTTGCTTTGTCTGTTCCAGTATGTTCATTTCTTGATTTTATTCTATTTTCTCAACAAGAAGCGCGTTATTTGTTTGCTGC
GCGTTTGCTCCTTTCTTTTTGTTTATTTATTTTAGCTTTTATCCTTAAAAACCAGCCTAGCGTACGTACGGTACGTATCG
TTATGCCGATAGTGTTTTTAGTACCAATGTTTTTCTTTATTTTCACTATGGTAATTATTTCCCCTACGCCAAATGAAAAC
ATTCCTGCCATTTTTGAGATGATGCCATATTTTATTTTAGCCATGTTAGGGTTATTCCCGTTAACTATCAGCGGTGGTGC
TTTAGTTATTTCATTGATTTCCATCCAGTTTGTCGGTTTTGAATTATGGATTAGCAATAACAGTTACTGGGTCATTTTTA
ATGATATTTGGCTATTTCTTTTATTTGCAGGCATAAGTTTATGGTTACAAGTAGGGCAATTGTCAATGTTGATGAAGCTT
TATCGAGAATCAACCGTTGATCCATTAACCAAATTAATCAATCGTAGAGTGCTATTTAGATTGGCTGCCAATGATCTGGA
AAAACAATCAAACTTTTGTCTGATCATGTTTGATCTGGACCGATTTAAACGTATTAATGATACTTACGGCCATGGTGTAG
GTGATAAAGTGCTCGTTTCCATCGCTCAGGTTATTCAACGAGAGTTACGACAGAGTGATATTGTTGCACGTTTTGGTGGG
GAAGAATTTGTCGCTATTCTTCCTGAAATAGGGTTAGAACAAGCCACTCGAATAGGGCAGAGGATAAGACGGATGATAAG
TCAAGAATCGGTGCAATTAACCGATGGTTTGGTGATAAAAACCACCAGCAGTATCGGTGTTACTCAAAAAAGAGTAAATG
AATCTCTTGATGAAACACTCAAACGCGCGGATGATTTTTTATACTACGCCAAAGAAAATGGTAGAAACCAAGTTGTATCG
GACATCGACAATATTAATCCTTCCCTGTGA

Upstream 100 bases:

>100_bases
CAAACTAAACTGTCTCTGTATGTTATATGGTCACCGCCATTGAATAATAAAATTAATTGACGATTCACCAAAAAAATTCC
TTTGAGGCAGTGTAAAAGAG

Downstream 100 bases:

>100_bases
GATTGACGTAATTTCTGACAAAAAACAAGATACCCAAATCTTTTTATCTAAATTTTCTTTTAATAAAGGGTTAAGCTATA
ACCGTCAATGGGGATCTAGC

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MINKDVTQEACIDYELTVSNDANEQTERRKSVSSTNITRSFFSLGRTALTDLLSTNLHSKDFVNTRTSFITSRLWLICIF
FALSVPVCSFLDFILFSQQEARYLFAARLLLSFCLFILAFILKNQPSVRTVRIVMPIVFLVPMFFFIFTMVIISPTPNEN
IPAIFEMMPYFILAMLGLFPLTISGGALVISLISIQFVGFELWISNNSYWVIFNDIWLFLLFAGISLWLQVGQLSMLMKL
YRESTVDPLTKLINRRVLFRLAANDLEKQSNFCLIMFDLDRFKRINDTYGHGVGDKVLVSIAQVIQRELRQSDIVARFGG
EEFVAILPEIGLEQATRIGQRIRRMISQESVQLTDGLVIKTTSSIGVTQKRVNESLDETLKRADDFLYYAKENGRNQVVS
DIDNINPSL

Sequences:

>Translated_409_residues
MINKDVTQEACIDYELTVSNDANEQTERRKSVSSTNITRSFFSLGRTALTDLLSTNLHSKDFVNTRTSFITSRLWLICIF
FALSVPVCSFLDFILFSQQEARYLFAARLLLSFCLFILAFILKNQPSVRTVRIVMPIVFLVPMFFFIFTMVIISPTPNEN
IPAIFEMMPYFILAMLGLFPLTISGGALVISLISIQFVGFELWISNNSYWVIFNDIWLFLLFAGISLWLQVGQLSMLMKL
YRESTVDPLTKLINRRVLFRLAANDLEKQSNFCLIMFDLDRFKRINDTYGHGVGDKVLVSIAQVIQRELRQSDIVARFGG
EEFVAILPEIGLEQATRIGQRIRRMISQESVQLTDGLVIKTTSSIGVTQKRVNESLDETLKRADDFLYYAKENGRNQVVS
DIDNINPSL
>Mature_409_residues
MINKDVTQEACIDYELTVSNDANEQTERRKSVSSTNITRSFFSLGRTALTDLLSTNLHSKDFVNTRTSFITSRLWLICIF
FALSVPVCSFLDFILFSQQEARYLFAARLLLSFCLFILAFILKNQPSVRTVRIVMPIVFLVPMFFFIFTMVIISPTPNEN
IPAIFEMMPYFILAMLGLFPLTISGGALVISLISIQFVGFELWISNNSYWVIFNDIWLFLLFAGISLWLQVGQLSMLMKL
YRESTVDPLTKLINRRVLFRLAANDLEKQSNFCLIMFDLDRFKRINDTYGHGVGDKVLVSIAQVIQRELRQSDIVARFGG
EEFVAILPEIGLEQATRIGQRIRRMISQESVQLTDGLVIKTTSSIGVTQKRVNESLDETLKRADDFLYYAKENGRNQVVS
DIDNINPSL

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=166, Percent_Identity=39.7590361445783, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1787262, Length=161, Percent_Identity=37.888198757764, Blast_Score=112, Evalue=6e-26,
Organism=Escherichia coli, GI87082007, Length=159, Percent_Identity=40.251572327044, Blast_Score=108, Evalue=8e-25,
Organism=Escherichia coli, GI1787816, Length=158, Percent_Identity=37.3417721518987, Blast_Score=102, Evalue=6e-23,
Organism=Escherichia coli, GI145693134, Length=174, Percent_Identity=33.3333333333333, Blast_Score=102, Evalue=6e-23,
Organism=Escherichia coli, GI1788085, Length=164, Percent_Identity=37.8048780487805, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1788381, Length=171, Percent_Identity=33.3333333333333, Blast_Score=92, Evalue=8e-20,
Organism=Escherichia coli, GI1786584, Length=219, Percent_Identity=29.2237442922374, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI87081974, Length=189, Percent_Identity=30.6878306878307, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1787802, Length=169, Percent_Identity=30.1775147928994, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787056, Length=174, Percent_Identity=31.6091954022989, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1788956, Length=168, Percent_Identity=32.1428571428571, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1787541, Length=163, Percent_Identity=31.9018404907975, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 46745; Mature: 46745

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINKDVTQEACIDYELTVSNDANEQTERRKSVSSTNITRSFFSLGRTALTDLLSTNLHSK
CCCCCCCHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
DFVNTRTSFITSRLWLICIFFALSVPVCSFLDFILFSQQEARYLFAARLLLSFCLFILAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
ILKNQPSVRTVRIVMPIVFLVPMFFFIFTMVIISPTPNENIPAIFEMMPYFILAMLGLFP
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
LTISGGALVISLISIQFVGFELWISNNSYWVIFNDIWLFLLFAGISLWLQVGQLSMLMKL
HHCCCHHHHHHHHHHHHEEEEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YRESTVDPLTKLINRRVLFRLAANDLEKQSNFCLIMFDLDRFKRINDTYGHGVGDKVLVS
HHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHCHHCCCCCCHHHHHH
IAQVIQRELRQSDIVARFGGEEFVAILPEIGLEQATRIGQRIRRMISQESVQLTDGLVIK
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHCCEEEE
TTSSIGVTQKRVNESLDETLKRADDFLYYAKENGRNQVVSDIDNINPSL
ECCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHCCCCCC
>Mature Secondary Structure
MINKDVTQEACIDYELTVSNDANEQTERRKSVSSTNITRSFFSLGRTALTDLLSTNLHSK
CCCCCCCHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
DFVNTRTSFITSRLWLICIFFALSVPVCSFLDFILFSQQEARYLFAARLLLSFCLFILAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
ILKNQPSVRTVRIVMPIVFLVPMFFFIFTMVIISPTPNENIPAIFEMMPYFILAMLGLFP
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
LTISGGALVISLISIQFVGFELWISNNSYWVIFNDIWLFLLFAGISLWLQVGQLSMLMKL
HHCCCHHHHHHHHHHHHEEEEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YRESTVDPLTKLINRRVLFRLAANDLEKQSNFCLIMFDLDRFKRINDTYGHGVGDKVLVS
HHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHCHHCCCCCCHHHHHH
IAQVIQRELRQSDIVARFGGEEFVAILPEIGLEQATRIGQRIRRMISQESVQLTDGLVIK
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHCCEEEE
TTSSIGVTQKRVNESLDETLKRADDFLYYAKENGRNQVVSDIDNINPSL
ECCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]