| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is 119946675
Identifier: 119946675
GI number: 119946675
Start: 3753552
End: 3756176
Strand: Reverse
Name: 119946675
Synonym: Ping_3056
Alternate gene names: NA
Gene position: 3756176-3753552 (Counterclockwise)
Preceding gene: 119946676
Following gene: 119946673
Centisome position: 82.38
GC content: 40.38
Gene sequence:
>2625_bases ATGATCTTGATAAGAGCGGCATTGCTTATGTTATCCAGCTTTCTTTTTTGTCATTCTGCTTTTTCCAGCGTCCAGGATGA CTATTTTGAAAATATGGTAACCCTTCGAGTGGGCAGTTATCTGCAGCAGGAATTCGTTGAAGTAATGAGCGATTTTGACG GGGGTATCTATCTGGATATTGAAAATTTTCTGGAACTTACCGAGCTCACAGAATATACCCAGCTTTCGGTCGATCAGGGA AAGGTCACTCTGCTGATGGCGGGTAGCCTGTTTCCCGACAGGCAGAAGCGGCGAATAACAACAGAACTAAAAAAGCTTAA CAGTATAGAAATCGATGGCAGGCTGTATATTGATAAGGATAGCATTAGTGAACTTATTCCCCTGAAGGGAGTTCAGTGGG TAGCGGAAAAATACACTCTGGTAATATTACCGAATTTCAATCTGCCTCTGAATAGCCGGGTAAGCGCCGAAAAAAGAAAG CGTAAGCTAGAAGCAGACAAAAACGCTAAGGAAGCCTCCCCGAAGGATGACTTGTTTTTGAAAGCGGATCGCAGAATAAT CGATTTTGGTATGCTAAAGCTGAGGTATGACATAAGCAAACTTGGAAATTATTTTAAAAAAGAAGAGGAAAATGGCAATC TGGAGTTAGAGTACAGCTCCCAACTTTTCTACGGCGATTTTAATATCAGTCACAGTCTTTACCCCAGCGAAAAACTGCAC AATATCAGCCTGAAATATCCTTACTTTCTTAAGGAGAAGACAGTTACTCTCGGGGATAACTATGTCGCAGGGCAGGATAT TCTGGGGTATAACAGTAAGATTCGGGGGATATCGGTCAGTACTAATGACTACAGTGTCCAACGTTCAGGGCGGGATCTCA CCATCAGGGGGGAGGCACCCAAAAATTCAATGGTTGAAATCTATCAAAACGGTAAGGTAATGGACTATTTGACAGTGGAA GGCAAGGAGTATCAGTTCACCCTAACGATGAGAAGTAAAAAAGATGCTTTTGAAATAAAAATATATGACAGAAATGGTGT CCTTACTGAGGTGAAAGATATTAATGTAATGTCGGGAAATGGTTTTCTCTCGCAGGGTAAGTGGGATTATGATTTTTTCT ACGGACAAAACTCAGGAGCAGAAAATCGCGCCTGGGATGATCTTAAATACGGCCTCTCCTACGGCTTGACCAACAATCTC AGCTATTCCTTCGATTATTATAATACCCGCAATGAAGACAAGCTGTATCGATATGCAAAGCACCACGCCGGATACCGTTT TTCAAATTTAGCCGTGCCCTTAGTCATCAATATTGCCCATTATGATTCTTTTGAAGACCCCAGCAAGGGTTATATAACCG AATTGGAAAGTGAGCTTTTCTCTCAGCAATTATATTACAGCTATGAGCAGTACAGCAGCCTACTGGCGAAGGATGAAGGA AAGGATAGTTATCACGAGGCTGAAATAAGCGGGGATTATGGCCGAAGTGACTATTTTTTCCGCTTTTCAAATGAAAATTA TGAGAGCAGAAAAAAATACAAATACGATACGGGACTGAGTTATAACATTACAAAAAAGATACGCATGGATTGGGATCTTG GTAAAACAATTATAAAGAATGGTGACATAAGTGCTAATTACACCAGCAATATAGGTTTTAAGGCCAGTCGGGGAAATTTT ACCTATAGCTTGAATGCCGGGTATAATGTGGGAAGAGATCCCAAGTGGCAGTACAAGGGCAGTCTGAGGAAGAGACTCAG TAAGGGCAATAAATACTCTTATAATGTGAATGTTGATTATAATAAAAATGATCTTTTGACTCTGGGAATAGGTTTTCAGT ATAAATTTAATGCGTTTTTAAAGATGAACTATGACTACAGCAGCAAAAATGATGAGATGTACAATGTTGGTGCCAACTAC GAACAAGTTATTAATCTGAAAAAACCTTTCACACTCAATAGTGCTCGGGATCCTGATCATGGTTATGTCGAAGGAGCTGT TTTTATAGATAAAAATGGCAACGGGAAAAAAGAACTAGATGAACAACCCCTTGCCAATGTCGGTGTTGGCATAGGTAAAA ACCAGGTGACAACCAATAAAGACGGGCTGTTTTATCTCTCGGGGGTCGCTCCCTATAAAAACAACAAACTGAGCTATGAC TATTCTGGCACTATGATTGATCCCACCCTCAGAGCGGCTAATTCTCAGGAAATAAAGCTTATCCCCGCATCGGGTAGAAA AGTGGGTGTAGGACTTATCCCTTTGTCTATGATTATGGGCTCCATTAACCTGCCGGCAGTAGATAGAAAAATCAAGAAAA AGTTTTTCACTTATGTGGAGATAATAGTAGAAAAAGCAGGCGTCTACTACCGCAGTATCAAGCCTGAATACGATGGTTTT TATGTTATTCAGGATCTGCAGCCGGGAGAATATTCCCTTAAAATAAATTATCTGGGCAGTGAACAAGTGACCCTTGAAAA GGATGTTCTTGAGGTCGTTGTGAGCTCAGGAGAGACTGGGGATTTCTATGATGGAATAAATTTTAAAGTGACAGACATTC AAACTAAAAAAATTAAGAGCACCTTTGATGATGCAGACAATAACGATCAAACTATTTTAAAGTAA
Upstream 100 bases:
>100_bases AATTCATGGTTAAAAATGCCATTAAACCACATTCAAAAAAACTGGCTTATTATGTAATGCTTTTCGCAGCAGTGCTTCCC GTACTGACATTGTGGAAAGA
Downstream 100 bases:
>100_bases ATGTTGAAAAAATGGTGTGCATCAGGTTTTATTTGCAATTTTCACACTCGATTCTAAAACGTGAAAAGATGTGACATTTG CAATACAGTTTGAAAATATC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 874; Mature: 874
Protein sequence:
>874_residues MILIRAALLMLSSFLFCHSAFSSVQDDYFENMVTLRVGSYLQQEFVEVMSDFDGGIYLDIENFLELTELTEYTQLSVDQG KVTLLMAGSLFPDRQKRRITTELKKLNSIEIDGRLYIDKDSISELIPLKGVQWVAEKYTLVILPNFNLPLNSRVSAEKRK RKLEADKNAKEASPKDDLFLKADRRIIDFGMLKLRYDISKLGNYFKKEEENGNLELEYSSQLFYGDFNISHSLYPSEKLH NISLKYPYFLKEKTVTLGDNYVAGQDILGYNSKIRGISVSTNDYSVQRSGRDLTIRGEAPKNSMVEIYQNGKVMDYLTVE GKEYQFTLTMRSKKDAFEIKIYDRNGVLTEVKDINVMSGNGFLSQGKWDYDFFYGQNSGAENRAWDDLKYGLSYGLTNNL SYSFDYYNTRNEDKLYRYAKHHAGYRFSNLAVPLVINIAHYDSFEDPSKGYITELESELFSQQLYYSYEQYSSLLAKDEG KDSYHEAEISGDYGRSDYFFRFSNENYESRKKYKYDTGLSYNITKKIRMDWDLGKTIIKNGDISANYTSNIGFKASRGNF TYSLNAGYNVGRDPKWQYKGSLRKRLSKGNKYSYNVNVDYNKNDLLTLGIGFQYKFNAFLKMNYDYSSKNDEMYNVGANY EQVINLKKPFTLNSARDPDHGYVEGAVFIDKNGNGKKELDEQPLANVGVGIGKNQVTTNKDGLFYLSGVAPYKNNKLSYD YSGTMIDPTLRAANSQEIKLIPASGRKVGVGLIPLSMIMGSINLPAVDRKIKKKFFTYVEIIVEKAGVYYRSIKPEYDGF YVIQDLQPGEYSLKINYLGSEQVTLEKDVLEVVVSSGETGDFYDGINFKVTDIQTKKIKSTFDDADNNDQTILK
Sequences:
>Translated_874_residues MILIRAALLMLSSFLFCHSAFSSVQDDYFENMVTLRVGSYLQQEFVEVMSDFDGGIYLDIENFLELTELTEYTQLSVDQG KVTLLMAGSLFPDRQKRRITTELKKLNSIEIDGRLYIDKDSISELIPLKGVQWVAEKYTLVILPNFNLPLNSRVSAEKRK RKLEADKNAKEASPKDDLFLKADRRIIDFGMLKLRYDISKLGNYFKKEEENGNLELEYSSQLFYGDFNISHSLYPSEKLH NISLKYPYFLKEKTVTLGDNYVAGQDILGYNSKIRGISVSTNDYSVQRSGRDLTIRGEAPKNSMVEIYQNGKVMDYLTVE GKEYQFTLTMRSKKDAFEIKIYDRNGVLTEVKDINVMSGNGFLSQGKWDYDFFYGQNSGAENRAWDDLKYGLSYGLTNNL SYSFDYYNTRNEDKLYRYAKHHAGYRFSNLAVPLVINIAHYDSFEDPSKGYITELESELFSQQLYYSYEQYSSLLAKDEG KDSYHEAEISGDYGRSDYFFRFSNENYESRKKYKYDTGLSYNITKKIRMDWDLGKTIIKNGDISANYTSNIGFKASRGNF TYSLNAGYNVGRDPKWQYKGSLRKRLSKGNKYSYNVNVDYNKNDLLTLGIGFQYKFNAFLKMNYDYSSKNDEMYNVGANY EQVINLKKPFTLNSARDPDHGYVEGAVFIDKNGNGKKELDEQPLANVGVGIGKNQVTTNKDGLFYLSGVAPYKNNKLSYD YSGTMIDPTLRAANSQEIKLIPASGRKVGVGLIPLSMIMGSINLPAVDRKIKKKFFTYVEIIVEKAGVYYRSIKPEYDGF YVIQDLQPGEYSLKINYLGSEQVTLEKDVLEVVVSSGETGDFYDGINFKVTDIQTKKIKSTFDDADNNDQTILK >Mature_874_residues MILIRAALLMLSSFLFCHSAFSSVQDDYFENMVTLRVGSYLQQEFVEVMSDFDGGIYLDIENFLELTELTEYTQLSVDQG KVTLLMAGSLFPDRQKRRITTELKKLNSIEIDGRLYIDKDSISELIPLKGVQWVAEKYTLVILPNFNLPLNSRVSAEKRK RKLEADKNAKEASPKDDLFLKADRRIIDFGMLKLRYDISKLGNYFKKEEENGNLELEYSSQLFYGDFNISHSLYPSEKLH NISLKYPYFLKEKTVTLGDNYVAGQDILGYNSKIRGISVSTNDYSVQRSGRDLTIRGEAPKNSMVEIYQNGKVMDYLTVE GKEYQFTLTMRSKKDAFEIKIYDRNGVLTEVKDINVMSGNGFLSQGKWDYDFFYGQNSGAENRAWDDLKYGLSYGLTNNL SYSFDYYNTRNEDKLYRYAKHHAGYRFSNLAVPLVINIAHYDSFEDPSKGYITELESELFSQQLYYSYEQYSSLLAKDEG KDSYHEAEISGDYGRSDYFFRFSNENYESRKKYKYDTGLSYNITKKIRMDWDLGKTIIKNGDISANYTSNIGFKASRGNF TYSLNAGYNVGRDPKWQYKGSLRKRLSKGNKYSYNVNVDYNKNDLLTLGIGFQYKFNAFLKMNYDYSSKNDEMYNVGANY EQVINLKKPFTLNSARDPDHGYVEGAVFIDKNGNGKKELDEQPLANVGVGIGKNQVTTNKDGLFYLSGVAPYKNNKLSYD YSGTMIDPTLRAANSQEIKLIPASGRKVGVGLIPLSMIMGSINLPAVDRKIKKKFFTYVEIIVEKAGVYYRSIKPEYDGF YVIQDLQPGEYSLKINYLGSEQVTLEKDVLEVVVSSGETGDFYDGINFKVTDIQTKKIKSTFDDADNNDQTILK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 100194; Mature: 100194
Theoretical pI: Translated: 6.56; Mature: 6.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MILIRAALLMLSSFLFCHSAFSSVQDDYFENMVTLRVGSYLQQEFVEVMSDFDGGIYLDI CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEHHHHHHHHHHHHHHHCCCCCEEEEH ENFLELTELTEYTQLSVDQGKVTLLMAGSLFPDRQKRRITTELKKLNSIEIDGRLYIDKD HHHHHHHHHHHHHEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCEEEECHH SISELIPLKGVQWVAEKYTLVILPNFNLPLNSRVSAEKRKRKLEADKNAKEASPKDDLFL HHHHHCCCCCHHEEECCEEEEEEECCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEE KADRRIIDFGMLKLRYDISKLGNYFKKEEENGNLELEYSSQLFYGDFNISHSLYPSEKLH ECCCEEEEEEEEEEEECHHHHHHHHHCCCCCCCEEEEECCEEEEEEECCCCCCCCCCHHC NISLKYPYFLKEKTVTLGDNYVAGQDILGYNSKIRGISVSTNDYSVQRSGRDLTIRGEAP EEEEECCEEEECEEEEECCCEECCCCEECCCCEEEEEEEECCCEEEEECCCEEEEECCCC KNSMVEIYQNGKVMDYLTVEGKEYQFTLTMRSKKDAFEIKIYDRNGVLTEVKDINVMSGN CCCEEEEECCCCEEEEEEECCCEEEEEEEEECCCCEEEEEEECCCCCEEEEEEEEEEECC GFLSQGKWDYDFFYGQNSGAENRAWDDLKYGLSYGLTNNLSYSFDYYNTRNEDKLYRYAK CCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHH HHAGYRFSNLAVPLVINIAHYDSFEDPSKGYITELESELFSQQLYYSYEQYSSLLAKDEG HHCCCEECCEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC KDSYHEAEISGDYGRSDYFFRFSNENYESRKKYKYDTGLSYNITKKIRMDWDLGKTIIKN CCCCEEEEECCCCCCCCEEEEECCCCCCHHHCEEECCCCEEEEEEEEEECCCCCCHHHCC GDISANYTSNIGFKASRGNFTYSLNAGYNVGRDPKWQYKGSLRKRLSKGNKYSYNVNVDY CCCCCEEECCCCEEECCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEE NKNDLLTLGIGFQYKFNAFLKMNYDYSSKNDEMYNVGANYEQVINLKKPFTLNSARDPDH CCCCEEEEEECEEEEEEEEEEEECCCCCCCCCEEECCCCHHHHEECCCCEEECCCCCCCC GYVEGAVFIDKNGNGKKELDEQPLANVGVGIGKNQVTTNKDGLFYLSGVAPYKNNKLSYD CEEEEEEEEECCCCCCCCCCCCCHHHCCCCCCCCCEECCCCCEEEEEEECCCCCCEEEEE YSGTMIDPTLRAANSQEIKLIPASGRKVGVGLIPLSMIMGSINLPAVDRKIKKKFFTYVE CCCCEECCHHHCCCCCEEEEEECCCCEEEEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHH IIVEKAGVYYRSIKPEYDGFYVIQDLQPGEYSLKINYLGSEQVTLEKDVLEVVVSSGETG HHHHHCCCEEEECCCCCCCEEEEEECCCCCEEEEEEEECCCCEEHHHHHHHHHHCCCCCC DFYDGINFKVTDIQTKKIKSTFDDADNNDQTILK CCCCCCCEEEEECCHHHHHHHCCCCCCCCCEECC >Mature Secondary Structure MILIRAALLMLSSFLFCHSAFSSVQDDYFENMVTLRVGSYLQQEFVEVMSDFDGGIYLDI CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEHHHHHHHHHHHHHHHCCCCCEEEEH ENFLELTELTEYTQLSVDQGKVTLLMAGSLFPDRQKRRITTELKKLNSIEIDGRLYIDKD HHHHHHHHHHHHHEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCEEEECHH SISELIPLKGVQWVAEKYTLVILPNFNLPLNSRVSAEKRKRKLEADKNAKEASPKDDLFL HHHHHCCCCCHHEEECCEEEEEEECCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEE KADRRIIDFGMLKLRYDISKLGNYFKKEEENGNLELEYSSQLFYGDFNISHSLYPSEKLH ECCCEEEEEEEEEEEECHHHHHHHHHCCCCCCCEEEEECCEEEEEEECCCCCCCCCCHHC NISLKYPYFLKEKTVTLGDNYVAGQDILGYNSKIRGISVSTNDYSVQRSGRDLTIRGEAP EEEEECCEEEECEEEEECCCEECCCCEECCCCEEEEEEEECCCEEEEECCCEEEEECCCC KNSMVEIYQNGKVMDYLTVEGKEYQFTLTMRSKKDAFEIKIYDRNGVLTEVKDINVMSGN CCCEEEEECCCCEEEEEEECCCEEEEEEEEECCCCEEEEEEECCCCCEEEEEEEEEEECC GFLSQGKWDYDFFYGQNSGAENRAWDDLKYGLSYGLTNNLSYSFDYYNTRNEDKLYRYAK CCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHH HHAGYRFSNLAVPLVINIAHYDSFEDPSKGYITELESELFSQQLYYSYEQYSSLLAKDEG HHCCCEECCEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC KDSYHEAEISGDYGRSDYFFRFSNENYESRKKYKYDTGLSYNITKKIRMDWDLGKTIIKN CCCCEEEEECCCCCCCCEEEEECCCCCCHHHCEEECCCCEEEEEEEEEECCCCCCHHHCC GDISANYTSNIGFKASRGNFTYSLNAGYNVGRDPKWQYKGSLRKRLSKGNKYSYNVNVDY CCCCCEEECCCCEEECCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEE NKNDLLTLGIGFQYKFNAFLKMNYDYSSKNDEMYNVGANYEQVINLKKPFTLNSARDPDH CCCCEEEEEECEEEEEEEEEEEECCCCCCCCCEEECCCCHHHHEECCCCEEECCCCCCCC GYVEGAVFIDKNGNGKKELDEQPLANVGVGIGKNQVTTNKDGLFYLSGVAPYKNNKLSYD CEEEEEEEEECCCCCCCCCCCCCHHHCCCCCCCCCEECCCCCEEEEEEECCCCCCEEEEE YSGTMIDPTLRAANSQEIKLIPASGRKVGVGLIPLSMIMGSINLPAVDRKIKKKFFTYVE CCCCEECCHHHCCCCCEEEEEECCCCEEEEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHH IIVEKAGVYYRSIKPEYDGFYVIQDLQPGEYSLKINYLGSEQVTLEKDVLEVVVSSGETG HHHHHCCCEEEECCCCCCCEEEEEECCCCCEEEEEEEECCCCEEHHHHHHHHHHCCCCCC DFYDGINFKVTDIQTKKIKSTFDDADNNDQTILK CCCCCCCEEEEECCHHHHHHHCCCCCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA