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The map label for this gene is yggW [H]

Identifier: 119946667

GI number: 119946667

Start: 3743707

End: 3744849

Strand: Direct

Name: yggW [H]

Synonym: Ping_3046

Alternate gene names: 119946667

Gene position: 3743707-3744849 (Clockwise)

Preceding gene: 119946666

Following gene: 119946668

Centisome position: 82.11

GC content: 40.16

Gene sequence:

>1143_bases
ATGTTAAAACTTCCTCCGCTAAGCCTTTATATTCATATCCCCTGGTGCATTGAAAAATGTCCATACTGTGATTTTAATTC
ACATAAATTACGTGGAGAGGTGCCTGAAAAGGAGTATCTGCACGCTTTATTGGAAGATCTAAGCAATGATTTGGTTTATG
TTCAGGGCCGCGTCCTGGAAACCATTTTTATTGGCGGCGGAACGCCAAGTTTATTATCAGCATCGGGTATCGGCTGGTTA
TTAACCGAAATAGAGAAAAAAATCCCCTTCAAAAAGAATATGGAGATCACCTTAGAAGCCAATCCAGGCGCCATTGAGAA
TCAAAAAATAGCCGACTTCAAAGCATTCGGTATTAATCGCTTCTCCTTTGGCGTACAAAGTTTCCAACAGGATAAACTTA
CAAAACTGGGCCGTATTCATGGCGTAGAGGAAGCAAAAACAGCAGCAAGGCAAGCCCATCACGTTGGCATGAAAACCTTT
AATTTAGATTTAATGCATGGTTTACCGGATCAAAGCCTTGACGATGCATTAAGTGATTTGCAGACAGCTATCGATCTTAA
TCCTACCCACATCTCCTGGTATCAACTCACCATAGAGCCCAATACGCAGTTTTTTTCCAAGCCGCCCGTATTACCTGAAG
ATGATTTATTATGGGAGATTCAAGAAAAAGGGCAGCAGTTACTGGCTGATAATGGTTATATTCAATACGAGATTTCAGCT
TATGGCAAAGTGGGTTTTGAATGTTTACATAACTTAAACTACTGGAAATTTGGTGATTATATCGGTATTGGTTGCGGTGC
TCATGGCAAGTTGACCCTGCCCCTGCAGAATAAAATATTACGCACCGTTAAAGTCAAACATCCCAAGGGTTATTTAGAGC
CAACCCGCGCCTATCTTGATCACATCAATCAGGTCGAAAAAAGTGATTTAGCTTTTGAGTATATGATCAACCGCCTGCGT
TTATTTGAGGCTGTTCCTTTTACTGAATTTGAAGATTTCACCGGATTAAGTCTTGAGTCGATTAAACTCCCACTTCAAAC
AGCCATTGCAAAAAATCTGTTAGTTGAAAATGAGCAGAGTTGGCAAGTAAGCCCATTAGGTTATCGTTACCTTAATGATC
TATTAACCTTATTTACGGATTAA

Upstream 100 bases:

>100_bases
GTTGAATTGCTTAAAAAGCAATTAGGTTAAATTAAGATTTAAGATAACAATAAACGCAGACTATCATCTGCGTTTTTCTC
CCAATAATTTCGAGTACTTC

Downstream 100 bases:

>100_bases
TCAGCTAATACCAAAAGAACGAAAAAGATGATCACCCTTGCTGGTTAAAATCCTTGATCACTTCATTAATTCTTTTGGTA
TGACAACCACAATAAGAAAC

Product: putative oxygen-independent coproporphyrinogen III oxidase

Products: Protoporphyrinogen IX; CO2; H2O

Alternate protein names: NA

Number of amino acids: Translated: 380; Mature: 380

Protein sequence:

>380_residues
MLKLPPLSLYIHIPWCIEKCPYCDFNSHKLRGEVPEKEYLHALLEDLSNDLVYVQGRVLETIFIGGGTPSLLSASGIGWL
LTEIEKKIPFKKNMEITLEANPGAIENQKIADFKAFGINRFSFGVQSFQQDKLTKLGRIHGVEEAKTAARQAHHVGMKTF
NLDLMHGLPDQSLDDALSDLQTAIDLNPTHISWYQLTIEPNTQFFSKPPVLPEDDLLWEIQEKGQQLLADNGYIQYEISA
YGKVGFECLHNLNYWKFGDYIGIGCGAHGKLTLPLQNKILRTVKVKHPKGYLEPTRAYLDHINQVEKSDLAFEYMINRLR
LFEAVPFTEFEDFTGLSLESIKLPLQTAIAKNLLVENEQSWQVSPLGYRYLNDLLTLFTD

Sequences:

>Translated_380_residues
MLKLPPLSLYIHIPWCIEKCPYCDFNSHKLRGEVPEKEYLHALLEDLSNDLVYVQGRVLETIFIGGGTPSLLSASGIGWL
LTEIEKKIPFKKNMEITLEANPGAIENQKIADFKAFGINRFSFGVQSFQQDKLTKLGRIHGVEEAKTAARQAHHVGMKTF
NLDLMHGLPDQSLDDALSDLQTAIDLNPTHISWYQLTIEPNTQFFSKPPVLPEDDLLWEIQEKGQQLLADNGYIQYEISA
YGKVGFECLHNLNYWKFGDYIGIGCGAHGKLTLPLQNKILRTVKVKHPKGYLEPTRAYLDHINQVEKSDLAFEYMINRLR
LFEAVPFTEFEDFTGLSLESIKLPLQTAIAKNLLVENEQSWQVSPLGYRYLNDLLTLFTD
>Mature_380_residues
MLKLPPLSLYIHIPWCIEKCPYCDFNSHKLRGEVPEKEYLHALLEDLSNDLVYVQGRVLETIFIGGGTPSLLSASGIGWL
LTEIEKKIPFKKNMEITLEANPGAIENQKIADFKAFGINRFSFGVQSFQQDKLTKLGRIHGVEEAKTAARQAHHVGMKTF
NLDLMHGLPDQSLDDALSDLQTAIDLNPTHISWYQLTIEPNTQFFSKPPVLPEDDLLWEIQEKGQQLLADNGYIQYEISA
YGKVGFECLHNLNYWKFGDYIGIGCGAHGKLTLPLQNKILRTVKVKHPKGYLEPTRAYLDHINQVEKSDLAFEYMINRLR
LFEAVPFTEFEDFTGLSLESIKLPLQTAIAKNLLVENEQSWQVSPLGYRYLNDLLTLFTD

Specific function: Unknown

COG id: COG0635

COG function: function code H; Coproporphyrinogen III oxidase and related Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the anaerobic coproporphyrinogen-III oxidase family [H]

Homologues:

Organism=Homo sapiens, GI8922911, Length=269, Percent_Identity=33.8289962825279, Blast_Score=171, Evalue=9e-43,
Organism=Escherichia coli, GI1789325, Length=378, Percent_Identity=57.9365079365079, Blast_Score=471, Evalue=1e-134,
Organism=Escherichia coli, GI87082341, Length=231, Percent_Identity=29.4372294372294, Blast_Score=108, Evalue=5e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR004559
- InterPro:   IPR010723
- InterPro:   IPR007197 [H]

Pfam domain/function: PF06969 HemN_C; PF04055 Radical_SAM [H]

EC number: 1.3.3.3

Molecular weight: Translated: 43259; Mature: 43259

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKLPPLSLYIHIPWCIEKCPYCDFNSHKLRGEVPEKEYLHALLEDLSNDLVYVQGRVLE
CCCCCCEEEEEECCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECEEEE
TIFIGGGTPSLLSASGIGWLLTEIEKKIPFKKNMEITLEANPGAIENQKIADFKAFGINR
EEEECCCCCHHHHCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHHCCCH
FSFGVQSFQQDKLTKLGRIHGVEEAKTAARQAHHVGMKTFNLDLMHGLPDQSLDDALSDL
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEEHHHCCCCCCHHHHHHHHH
QTAIDLNPTHISWYQLTIEPNTQFFSKPPVLPEDDLLWEIQEKGQQLLADNGYIQYEISA
HHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEC
YGKVGFECLHNLNYWKFGDYIGIGCGAHGKLTLPLQNKILRTVKVKHPKGYLEPTRAYLD
CCHHHHHHHHCCCCEEECCEEEECCCCCCEEEECHHHHHEEHEEEECCCCCCCHHHHHHH
HINQVEKSDLAFEYMINRLRLFEAVPFTEFEDFTGLSLESIKLPLQTAIAKNLLVENEQS
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHCCCCCC
WQVSPLGYRYLNDLLTLFTD
CEECCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MLKLPPLSLYIHIPWCIEKCPYCDFNSHKLRGEVPEKEYLHALLEDLSNDLVYVQGRVLE
CCCCCCEEEEEECCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECEEEE
TIFIGGGTPSLLSASGIGWLLTEIEKKIPFKKNMEITLEANPGAIENQKIADFKAFGINR
EEEECCCCCHHHHCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHHCCCH
FSFGVQSFQQDKLTKLGRIHGVEEAKTAARQAHHVGMKTFNLDLMHGLPDQSLDDALSDL
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEEHHHCCCCCCHHHHHHHHH
QTAIDLNPTHISWYQLTIEPNTQFFSKPPVLPEDDLLWEIQEKGQQLLADNGYIQYEISA
HHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEC
YGKVGFECLHNLNYWKFGDYIGIGCGAHGKLTLPLQNKILRTVKVKHPKGYLEPTRAYLD
CCHHHHHHHHCCCCEEECCEEEECCCCCCEEEECHHHHHEEHEEEECCCCCCCHHHHHHH
HINQVEKSDLAFEYMINRLRLFEAVPFTEFEDFTGLSLESIKLPLQTAIAKNLLVENEQS
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHCCCCCC
WQVSPLGYRYLNDLLTLFTD
CEECCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Coproporphyrinogen III; O2; H+

Specific reaction: coproporphyrinogen-III + O2 + 2 H+ = protoporphyrinogen-IX + 2 CO2 + 2 H2O

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]