Click here to switch to the map view.

The map label for this gene is tnpA1 [H]

Identifier: 119946619

GI number: 119946619

Start: 3695345

End: 3695773

Strand: Direct

Name: tnpA1 [H]

Synonym: Ping_2998

Alternate gene names: 119946619

Gene position: 3695345-3695773 (Clockwise)

Preceding gene: 119946618

Following gene: 119946622

Centisome position: 81.05

GC content: 33.8

Gene sequence:

>429_bases
ATGGATTATCGATATGGTAGCCATACGGTTTTTAAGATTCAGTATCATTTTGTTTTTGTTACTAAATATAGGTATCAAGT
TTTAAAAAGTGATGTTGGGTTGAAGGTCAGAGAATTAATCAGGCAAACATGTAATTCTTTTGAAATTGAGATTTTAAAAG
AAGTTGTTAGCAAAGATCATGTTCATCTTTTAGTTTCAGCTCCCCCTAATATGGCACCAAGTAAAATAATGAGAAGGGTG
AAGGGGAGATCCTCATCTAAACTATTTAAATGTTTCCCCAACTTAAAAAAGCGATACTGGGGGCGTCATTTTTGGTCTAG
AGGATATTTTTATGTCACATCTGGGGGTGTTACTGAAGAAATGATTAAAGAGTATTTAGCCCATCATTTTGAGCCAAAAG
TCGATGATAATTTTAGAACTGAGCACTAA

Upstream 100 bases:

>100_bases
GGTTTAACTTTATTAGTCTCCTGAAAAGGTTAAAACCCTCGGCTTTAGCCGGTCAGCTTTAGCTATAAAATCTTAATAGG
TATTTGGTTAGGAGATGGGA

Downstream 100 bases:

>100_bases
AACAACGGGTCTTTGACCCGTATCCGGACTTTAGTCCATAGATCCTCACCCACCTACTTTAGTAGCTGGTTGTTGAGTTT
TTGGAGTTTCACCTTTGACT

Product: transposase IS200-family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MDYRYGSHTVFKIQYHFVFVTKYRYQVLKSDVGLKVRELIRQTCNSFEIEILKEVVSKDHVHLLVSAPPNMAPSKIMRRV
KGRSSSKLFKCFPNLKKRYWGRHFWSRGYFYVTSGGVTEEMIKEYLAHHFEPKVDDNFRTEH

Sequences:

>Translated_142_residues
MDYRYGSHTVFKIQYHFVFVTKYRYQVLKSDVGLKVRELIRQTCNSFEIEILKEVVSKDHVHLLVSAPPNMAPSKIMRRV
KGRSSSKLFKCFPNLKKRYWGRHFWSRGYFYVTSGGVTEEMIKEYLAHHFEPKVDDNFRTEH
>Mature_142_residues
MDYRYGSHTVFKIQYHFVFVTKYRYQVLKSDVGLKVRELIRQTCNSFEIEILKEVVSKDHVHLLVSAPPNMAPSKIMRRV
KGRSSSKLFKCFPNLKKRYWGRHFWSRGYFYVTSGGVTEEMIKEYLAHHFEPKVDDNFRTEH

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG1943

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 17 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002686 [H]

Pfam domain/function: PF01797 Transposase_17 [H]

EC number: NA

Molecular weight: Translated: 16998; Mature: 16998

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYRYGSHTVFKIQYHFVFVTKYRYQVLKSDVGLKVRELIRQTCNSFEIEILKEVVSKDH
CCCCCCCEEEEEEEEEEEEEHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHCCCC
VHLLVSAPPNMAPSKIMRRVKGRSSSKLFKCFPNLKKRYWGRHFWSRGYFYVTSGGVTEE
EEEEEECCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHH
MIKEYLAHHFEPKVDDNFRTEH
HHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MDYRYGSHTVFKIQYHFVFVTKYRYQVLKSDVGLKVRELIRQTCNSFEIEILKEVVSKDH
CCCCCCCEEEEEEEEEEEEEHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHCCCC
VHLLVSAPPNMAPSKIMRRVKGRSSSKLFKCFPNLKKRYWGRHFWSRGYFYVTSGGVTEE
EEEEEECCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHH
MIKEYLAHHFEPKVDDNFRTEH
HHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]