Click here to switch to the map view.

The map label for this gene is ureF

Identifier: 119946617

GI number: 119946617

Start: 3693595

End: 3694293

Strand: Direct

Name: ureF

Synonym: Ping_2996

Alternate gene names: 119946617

Gene position: 3693595-3694293 (Clockwise)

Preceding gene: 119946616

Following gene: 119946618

Centisome position: 81.01

GC content: 45.78

Gene sequence:

>699_bases
ATGACAGCTGATAAGCAAAGTTCTACGCTGAAACTTAACCGTTTACTGCAACTGTGCAGTGCCAACTTGCCGGTCGGCGG
GTTTTCATTCTCCCAGGGGCTCGAGTATGCGGTTGAGATGAACTGGATAAGCGGCCAAAAAAGCACCTTTGAGTGGATTG
AACTGAACTTAAGCGAGTCGCTCTCGCGCACCGATTTAGCCATTTTAAAACGCCTATATCAAGCCTTAGACAGCAGTGAT
TTTACAGCTTTTAAACTGGCTAACCAGCACCTTATCGCCTGCCGTGAAAGCAGTGAATTGCGTTTCGCGGATCTGGCCAT
GGGTAAAGCCTTTGTGCGTTTATTAAAGCAGCTAGACAGCCTCGACAGCGAGCCTTATTCAGAATTATTAAATGAACCAG
AACTGAGTTTTGTCAGCGTATTTGCTATTAGCGCATACCTTTGTGAGCTGGATTTAACCGCGGCACAAAGCGGTTTTTGC
TGGACCTATATTGATAACCAGGTTGCAGCAGCCACTAAATTAGTCCCTTTAGGGCAAACCCAGGCACAAAACCTTTTATT
TGATTTAAGCGCAGAAGTGGATCATCTGTTGACCATCGCCAACCAATTAAAAGATCATGAAATAGGTGGTAGCTTACCGC
GTTTAGCGATGGCCAGCGCCTGGCATGAAACCCAATACACGCGATTATTTAGATCCTAA

Upstream 100 bases:

>100_bases
CTGGCTGAAAATTACGGTTTATCGGTTAATAGTATACCGGCTGTTTTTGAGCCTGAAAATGGGGCCTACGGCGTGCGCAG
CCACGGTCATAGCCATGCAC

Downstream 100 bases:

>100_bases
AAAAAATTAGATCTTAAAAAATTTAACCAGAGAGATTATTTATTATGAGAAAAAAACAACTTTTACGTATTGGCGTCGGT
GGCCCAGTTGGCTCAGGTAA

Product: urease accessory protein UreF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MTADKQSSTLKLNRLLQLCSANLPVGGFSFSQGLEYAVEMNWISGQKSTFEWIELNLSESLSRTDLAILKRLYQALDSSD
FTAFKLANQHLIACRESSELRFADLAMGKAFVRLLKQLDSLDSEPYSELLNEPELSFVSVFAISAYLCELDLTAAQSGFC
WTYIDNQVAAATKLVPLGQTQAQNLLFDLSAEVDHLLTIANQLKDHEIGGSLPRLAMASAWHETQYTRLFRS

Sequences:

>Translated_232_residues
MTADKQSSTLKLNRLLQLCSANLPVGGFSFSQGLEYAVEMNWISGQKSTFEWIELNLSESLSRTDLAILKRLYQALDSSD
FTAFKLANQHLIACRESSELRFADLAMGKAFVRLLKQLDSLDSEPYSELLNEPELSFVSVFAISAYLCELDLTAAQSGFC
WTYIDNQVAAATKLVPLGQTQAQNLLFDLSAEVDHLLTIANQLKDHEIGGSLPRLAMASAWHETQYTRLFRS
>Mature_231_residues
TADKQSSTLKLNRLLQLCSANLPVGGFSFSQGLEYAVEMNWISGQKSTFEWIELNLSESLSRTDLAILKRLYQALDSSDF
TAFKLANQHLIACRESSELRFADLAMGKAFVRLLKQLDSLDSEPYSELLNEPELSFVSVFAISAYLCELDLTAAQSGFCW
TYIDNQVAAATKLVPLGQTQAQNLLFDLSAEVDHLLTIANQLKDHEIGGSLPRLAMASAWHETQYTRLFRS

Specific function: Required for maturation of urease via the functional incorporation of the urease nickel metallocenter

COG id: COG0830

COG function: function code O; Urease accessory protein UreF

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ureF family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): UREF_PSYIN (A1SYY3)

Other databases:

- EMBL:   CP000510
- RefSeq:   YP_944297.1
- STRING:   A1SYY3
- GeneID:   4623687
- GenomeReviews:   CP000510_GR
- KEGG:   pin:Ping_2996
- eggNOG:   COG0830
- HOGENOM:   HBG709295
- OMA:   SPQLPIG
- ProtClustDB:   CLSK962536
- BioCyc:   PING357804:PING_2996-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01385
- InterPro:   IPR002639
- PIRSF:   PIRSF009467

Pfam domain/function: PF01730 UreF

EC number: NA

Molecular weight: Translated: 25899; Mature: 25767

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTADKQSSTLKLNRLLQLCSANLPVGGFSFSQGLEYAVEMNWISGQKSTFEWIELNLSES
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCEEEEEEEECCCCCCCHHEEECHHHH
LSRTDLAILKRLYQALDSSDFTAFKLANQHLIACRESSELRFADLAMGKAFVRLLKQLDS
HHHHHHHHHHHHHHHHCCCCCHHEECCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHC
LDSEPYSELLNEPELSFVSVFAISAYLCELDLTAAQSGFCWTYIDNQVAAATKLVPLGQT
CCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCH
QAQNLLFDLSAEVDHLLTIANQLKDHEIGGSLPRLAMASAWHETQYTRLFRS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TADKQSSTLKLNRLLQLCSANLPVGGFSFSQGLEYAVEMNWISGQKSTFEWIELNLSES
CCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCEEEEEEEECCCCCCCHHEEECHHHH
LSRTDLAILKRLYQALDSSDFTAFKLANQHLIACRESSELRFADLAMGKAFVRLLKQLDS
HHHHHHHHHHHHHHHHCCCCCHHEECCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHC
LDSEPYSELLNEPELSFVSVFAISAYLCELDLTAAQSGFCWTYIDNQVAAATKLVPLGQT
CCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCH
QAQNLLFDLSAEVDHLLTIANQLKDHEIGGSLPRLAMASAWHETQYTRLFRS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA