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The map label for this gene is skp [H]

Identifier: 119946588

GI number: 119946588

Start: 3658644

End: 3659156

Strand: Reverse

Name: skp [H]

Synonym: Ping_2967

Alternate gene names: 119946588

Gene position: 3659156-3658644 (Counterclockwise)

Preceding gene: 119946589

Following gene: 119946587

Centisome position: 80.25

GC content: 38.6

Gene sequence:

>513_bases
ATGAAGACGTTTTTTAAAGCAGTGACATTAGCCGCAACATTGATTTTCGTTCCCTATACGACAGCGGTACAGGCAGCACA
AAAAATTGCCGTGGTATACCCGTCAAAAATTATGCAAGAATCTCCGCAACGGAACAAGATTATTAAAAAATTAGAAGATG
AGTTCAAGGGCCGTTATCAAGCTCTGCAGCTATTAGAAAGCGAAATTAAGAAATTAGAAAAAGCAGTTCAGCGTGATGCT
GAATTATTAGGTAAAGACAAAGTGACCGCGATGAAACGTGAGATTGAGGTTAAAGTCTCTGAGTACAAATTAAAACGTAA
GGCATTTGAAGAGGATAATCGTCGTCGTCAAGGCGAAGAGCAACAAGAGGCCTTAATGGTACTGCGTGAGGTTATTAATG
ATATCGCCGCACAAGATGATTACGATATTATTCTTAATGGCGAGCAAATTGTTTTTTCTAAACCAGCACTTGATATATCC
GAGCGTGTTATTAAAGAAATCAGCAAAAAGTAG

Upstream 100 bases:

>100_bases
CGGTGAAACTTTCTAAGTACTTATTGTAGTATTATGACTCAGATTACTTGCAACAAGTGACATGAGTTTCTCAAAAATTT
AATTATCAAGGAGTTAAAAT

Downstream 100 bases:

>100_bases
GTTATTAAGTATGGTATACAATTTAGGGCAATTAGCACAACAACTTAACGCGCAATTGGTAGGAGATGCTGAGCTCAATA
TATATCGACTTGCAACCTTT

Product: outer membrane chaperone Skp (OmpH)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MKTFFKAVTLAATLIFVPYTTAVQAAQKIAVVYPSKIMQESPQRNKIIKKLEDEFKGRYQALQLLESEIKKLEKAVQRDA
ELLGKDKVTAMKREIEVKVSEYKLKRKAFEEDNRRRQGEEQQEALMVLREVINDIAAQDDYDIILNGEQIVFSKPALDIS
ERVIKEISKK

Sequences:

>Translated_170_residues
MKTFFKAVTLAATLIFVPYTTAVQAAQKIAVVYPSKIMQESPQRNKIIKKLEDEFKGRYQALQLLESEIKKLEKAVQRDA
ELLGKDKVTAMKREIEVKVSEYKLKRKAFEEDNRRRQGEEQQEALMVLREVINDIAAQDDYDIILNGEQIVFSKPALDIS
ERVIKEISKK
>Mature_170_residues
MKTFFKAVTLAATLIFVPYTTAVQAAQKIAVVYPSKIMQESPQRNKIIKKLEDEFKGRYQALQLLESEIKKLEKAVQRDA
ELLGKDKVTAMKREIEVKVSEYKLKRKAFEEDNRRRQGEEQQEALMVLREVINDIAAQDDYDIILNGEQIVFSKPALDIS
ERVIKEISKK

Specific function: Molecular chaperone that interacts specifically with outer membrane proteins, thus maintaining the solubility of early folding intermediates during passage through the periplasm [H]

COG id: COG2825

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the skp family [H]

Homologues:

Organism=Escherichia coli, GI1786375, Length=148, Percent_Identity=27.7027027027027, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: 580 Molecules/Cell In: Growth-Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005632 [H]

Pfam domain/function: PF03938 OmpH [H]

EC number: NA

Molecular weight: Translated: 19647; Mature: 19647

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTFFKAVTLAATLIFVPYTTAVQAAQKIAVVYPSKIMQESPQRNKIIKKLEDEFKGRYQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHH
ALQLLESEIKKLEKAVQRDAELLGKDKVTAMKREIEVKVSEYKLKRKAFEEDNRRRQGEE
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
QQEALMVLREVINDIAAQDDYDIILNGEQIVFSKPALDISERVIKEISKK
HHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEECCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MKTFFKAVTLAATLIFVPYTTAVQAAQKIAVVYPSKIMQESPQRNKIIKKLEDEFKGRYQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHH
ALQLLESEIKKLEKAVQRDAELLGKDKVTAMKREIEVKVSEYKLKRKAFEEDNRRRQGEE
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
QQEALMVLREVINDIAAQDDYDIILNGEQIVFSKPALDISERVIKEISKK
HHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEECCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]