Click here to switch to the map view.

The map label for this gene is yrbD [C]

Identifier: 119946508

GI number: 119946508

Start: 3564477

End: 3564959

Strand: Reverse

Name: yrbD [C]

Synonym: Ping_2885

Alternate gene names: 119946508

Gene position: 3564959-3564477 (Counterclockwise)

Preceding gene: 119946509

Following gene: 119946507

Centisome position: 78.19

GC content: 37.47

Gene sequence:

>483_bases
ATGGAAATAAATATGTCTCAGAAAAAAACAGAATTATGGGTTGGCATTTTTGTCATTGGCGCAATGATCTCATTGGCCAT
ATTAGCTTTTAATGTTGCCGGTCTTTCCTTTAAGGGGGAAGGCCGCAGTTATACTCTGTATGCCAGTTTTTCAAATGTTG
GTGGTTTAAAAGTTAGATCGCCAGTGAAACTTGGTGGTGTTGTTGTCGGCAGAGTTGAAGAAATTAGTTTAAATAAAGAG
AGTTATATGCCAGTTGTGCGTTTGGCTATGTTCGAAAATAAAGGGTATTATCCAGAAACCTCTTCAGTTTCGATTTTAAC
CTCGGGTTTATTAGGTGAGCAATATATCGGCCTGCAACCCGGTTTTATTATCGAGGGGGTTAATATGTTAGAAGAAGGAG
GACGTTTTGAGGATACTAAATCTGCTATCGTTCTTGAAGATTTAATTGGTCAATTTATCTATTCAATGAATAAGGGGGAT
TAA

Upstream 100 bases:

>100_bases
GTCATATAACAAGTGGTTGTTTCATCACCATTATTAAATGTTAGCAATGGATTTTATATTAACGGTATTTATGTTCGGAG
CGTAATCCGTCATATAAAAA

Downstream 100 bases:

>100_bases
TGCGTTATTTATTAATGGTAATGACACTGCTTTTTTCAGGTGGAGTATTTAGTGATGAAATAGATATGAGTAACCCAAAT
AAGGTTATTCAATCTGTATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 160

Protein sequence:

>160_residues
MEINMSQKKTELWVGIFVIGAMISLAILAFNVAGLSFKGEGRSYTLYASFSNVGGLKVRSPVKLGGVVVGRVEEISLNKE
SYMPVVRLAMFENKGYYPETSSVSILTSGLLGEQYIGLQPGFIIEGVNMLEEGGRFEDTKSAIVLEDLIGQFIYSMNKGD

Sequences:

>Translated_160_residues
MEINMSQKKTELWVGIFVIGAMISLAILAFNVAGLSFKGEGRSYTLYASFSNVGGLKVRSPVKLGGVVVGRVEEISLNKE
SYMPVVRLAMFENKGYYPETSSVSILTSGLLGEQYIGLQPGFIIEGVNMLEEGGRFEDTKSAIVLEDLIGQFIYSMNKGD
>Mature_160_residues
MEINMSQKKTELWVGIFVIGAMISLAILAFNVAGLSFKGEGRSYTLYASFSNVGGLKVRSPVKLGGVVVGRVEEISLNKE
SYMPVVRLAMFENKGYYPETSSVSILTSGLLGEQYIGLQPGFIIEGVNMLEEGGRFEDTKSAIVLEDLIGQFIYSMNKGD

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG1463

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, periplasmic component

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaD family [H]

Homologues:

Organism=Escherichia coli, GI1789584, Length=158, Percent_Identity=50, Blast_Score=150, Evalue=5e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003399 [H]

Pfam domain/function: PF02470 MCE [H]

EC number: NA

Molecular weight: Translated: 17449; Mature: 17449

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEINMSQKKTELWVGIFVIGAMISLAILAFNVAGLSFKGEGRSYTLYASFSNVGGLKVRS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEEEEEEECCCCCCEEECC
PVKLGGVVVGRVEEISLNKESYMPVVRLAMFENKGYYPETSSVSILTSGLLGEQYIGLQP
CCEECCEEEEEEEEEECCCHHCCHHHEEEEECCCCCCCCCCCHHEEECCCCCCCCCCCCC
GFIIEGVNMLEEGGRFEDTKSAIVLEDLIGQFIYSMNKGD
CEEECCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MEINMSQKKTELWVGIFVIGAMISLAILAFNVAGLSFKGEGRSYTLYASFSNVGGLKVRS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEEEEEEECCCCCCEEECC
PVKLGGVVVGRVEEISLNKESYMPVVRLAMFENKGYYPETSSVSILTSGLLGEQYIGLQP
CCEECCEEEEEEEEEECCCHHCCHHHEEEEECCCCCCCCCCCHHEEECCCCCCCCCCCCC
GFIIEGVNMLEEGGRFEDTKSAIVLEDLIGQFIYSMNKGD
CEEECCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]