Click here to switch to the map view.

The map label for this gene is petB [H]

Identifier: 119946497

GI number: 119946497

Start: 3553359

End: 3554639

Strand: Reverse

Name: petB [H]

Synonym: Ping_2873

Alternate gene names: 119946497

Gene position: 3554639-3553359 (Counterclockwise)

Preceding gene: 119946498

Following gene: 119946496

Centisome position: 77.96

GC content: 40.75

Gene sequence:

>1281_bases
ATGCTTAATAAATTAGTCACTGGAACAGTCGATTGGATAGATGCACGGATCCCGATGACGGAAACGTGGAACAAACATTT
AGCGCAATACCCAACACCGGCCAATTTCAACTTTTGGTACTTTTTTGGTGGCTTAGCCATGCTGGTTCTGGTTAACCAAA
TATTAACCGGTATCTGGTTGACAATGCACTACAACCCCTCTGCGGAATTAGCTTTTGCATCGGTTGAATATATTATGCGT
GACGTGCCTTATGGTTGGTTATTACGTTATATGCATTCAACAGGCGCTTCTGCGTTCTTTGTGGTTATCTATTTACATAT
GTTCCGCGGCTTGATTTACGGCTCATACCAAAAACCCCGCGAGTTAATTTGGATCTTCGGCATGTTGATCTTTCTGGTGT
TGATGGCCGAAGCCTTTATGGGTTACTTACTTCCTTGGGGACAGATGTCTTTCTGGGGTGCACAGGTAATTATCTCTTTA
TTTGGTGCAATTCCAATTATTGGCGATGATTTGACCCTTTGGATACGTGGTGATTATGTAATATCAGGTGCAACCTTAAA
CCGATTCTTTGCATTACATGTAATAGCATTGCCCTTAGCACTGGTTGCTTTAGTCTTTTTACATCTTATCGCATTGCATG
AAGTGGGATCGAATAATCCTGATGGTATTGATACTAAAGTGAAAAAAGGAACCGCTTCTGCTGATGCAAAAGGTAAGTTT
ACTTTCCACAAACAATACAGCGGTAAAAAAGATATTATCGACTCTATTCCCTTCCACCCTTACTTTACAGTAAAAGATAT
TATGGGGGTTTGTGGATTTTTAATCTTATTCTGTGGGGTTATCTTCTTTATGCCGGAAGGGGGAGGTTACTTCCTTGAGG
CGCCAAATTTTGAACCTGCAAACGGTTTGAAAACACCGACACATATCGCACCAGTTTGGTATTACACGCCTTTCTATGCC
ATTTTGCGTGCCATACCCGACAAGTTAATTGGTGTTATGTTCTTTGGTGGCTCCATTGTAATTCTTTTCTTCCTGCCTTG
GTTAGACCGTTGCAAGGTAAGATCAATTCGTTACCGTAGTTGGATACATAAAGCTAATATTGCACAATTCATTGTTTGTT
TTATTGTCTTAGGTGTATTGGGGGCTTTGCCCGCAACACCTTTATTAACCATGTTTGCGCAGGTTGGTACTGTCGGTTAC
TTCGGTTTCTTTATTGCTCTTTGGCTATACAGCAAAAACGAAAAAACTAAACCACTACCAACGAGGTTAACATTCAAATG
A

Upstream 100 bases:

>100_bases
TCTTCCAAGGTGTCCCTGCGCCATTAAATTTAGTTATCCCTCCTCATTATTACACGAGTGATACAACGATTCTTATCGGC
TCAGATAAAGGAGACGCCTA

Downstream 100 bases:

>100_bases
AAAAATTAATGATTGCCTTATTGGCATTATTACCGACACTGGTTTTTGCAGCAGGTAATGTTCAACTGGATAAAGCTAAT
TATGATTTAACGGATAAAGC

Product: fused ubiquinol-cytochrome c reductase and cytochrome b/b6

Products: Q; ferrocytochrome c

Alternate protein names: NA

Number of amino acids: Translated: 426; Mature: 426

Protein sequence:

>426_residues
MLNKLVTGTVDWIDARIPMTETWNKHLAQYPTPANFNFWYFFGGLAMLVLVNQILTGIWLTMHYNPSAELAFASVEYIMR
DVPYGWLLRYMHSTGASAFFVVIYLHMFRGLIYGSYQKPRELIWIFGMLIFLVLMAEAFMGYLLPWGQMSFWGAQVIISL
FGAIPIIGDDLTLWIRGDYVISGATLNRFFALHVIALPLALVALVFLHLIALHEVGSNNPDGIDTKVKKGTASADAKGKF
TFHKQYSGKKDIIDSIPFHPYFTVKDIMGVCGFLILFCGVIFFMPEGGGYFLEAPNFEPANGLKTPTHIAPVWYYTPFYA
ILRAIPDKLIGVMFFGGSIVILFFLPWLDRCKVRSIRYRSWIHKANIAQFIVCFIVLGVLGALPATPLLTMFAQVGTVGY
FGFFIALWLYSKNEKTKPLPTRLTFK

Sequences:

>Translated_426_residues
MLNKLVTGTVDWIDARIPMTETWNKHLAQYPTPANFNFWYFFGGLAMLVLVNQILTGIWLTMHYNPSAELAFASVEYIMR
DVPYGWLLRYMHSTGASAFFVVIYLHMFRGLIYGSYQKPRELIWIFGMLIFLVLMAEAFMGYLLPWGQMSFWGAQVIISL
FGAIPIIGDDLTLWIRGDYVISGATLNRFFALHVIALPLALVALVFLHLIALHEVGSNNPDGIDTKVKKGTASADAKGKF
TFHKQYSGKKDIIDSIPFHPYFTVKDIMGVCGFLILFCGVIFFMPEGGGYFLEAPNFEPANGLKTPTHIAPVWYYTPFYA
ILRAIPDKLIGVMFFGGSIVILFFLPWLDRCKVRSIRYRSWIHKANIAQFIVCFIVLGVLGALPATPLLTMFAQVGTVGY
FGFFIALWLYSKNEKTKPLPTRLTFK
>Mature_426_residues
MLNKLVTGTVDWIDARIPMTETWNKHLAQYPTPANFNFWYFFGGLAMLVLVNQILTGIWLTMHYNPSAELAFASVEYIMR
DVPYGWLLRYMHSTGASAFFVVIYLHMFRGLIYGSYQKPRELIWIFGMLIFLVLMAEAFMGYLLPWGQMSFWGAQVIISL
FGAIPIIGDDLTLWIRGDYVISGATLNRFFALHVIALPLALVALVFLHLIALHEVGSNNPDGIDTKVKKGTASADAKGKF
TFHKQYSGKKDIIDSIPFHPYFTVKDIMGVCGFLILFCGVIFFMPEGGGYFLEAPNFEPANGLKTPTHIAPVWYYTPFYA
ILRAIPDKLIGVMFFGGSIVILFFLPWLDRCKVRSIRYRSWIHKANIAQFIVCFIVLGVLGALPATPLLTMFAQVGTVGY
FGFFIALWLYSKNEKTKPLPTRLTFK

Specific function: Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis [H]

COG id: COG1290

COG function: function code C; Cytochrome b subunit of the bc complex

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b family [H]

Homologues:

Organism=Homo sapiens, GI251831119, Length=390, Percent_Identity=41.2820512820513, Blast_Score=259, Evalue=4e-69,
Organism=Saccharomyces cerevisiae, GI6226529, Length=382, Percent_Identity=41.0994764397906, Blast_Score=271, Evalue=2e-73,
Organism=Saccharomyces cerevisiae, GI6226532, Length=266, Percent_Identity=42.4812030075188, Blast_Score=208, Evalue=1e-54,
Organism=Saccharomyces cerevisiae, GI6226531, Length=154, Percent_Identity=50.6493506493506, Blast_Score=156, Evalue=6e-39,
Organism=Saccharomyces cerevisiae, GI6226530, Length=136, Percent_Identity=50, Blast_Score=132, Evalue=9e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016175
- InterPro:   IPR005798
- InterPro:   IPR005797
- InterPro:   IPR016174 [H]

Pfam domain/function: PF00032 Cytochrom_B_C; PF00033 Cytochrom_B_N [H]

EC number: 1.10.2.2

Molecular weight: Translated: 48259; Mature: 48259

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: PS51002 CYTB_NTER ; PS51003 CYTB_CTER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNKLVTGTVDWIDARIPMTETWNKHLAQYPTPANFNFWYFFGGLAMLVLVNQILTGIWL
CCCCHHCCCHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEE
TMHYNPSAELAFASVEYIMRDVPYGWLLRYMHSTGASAFFVVIYLHMFRGLIYGSYQKPR
EEEECCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHH
ELIWIFGMLIFLVLMAEAFMGYLLPWGQMSFWGAQVIISLFGAIPIIGDDLTLWIRGDYV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEECCCEEEEEECCEE
ISGATLNRFFALHVIALPLALVALVFLHLIALHEVGSNNPDGIDTKVKKGTASADAKGKF
EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCE
TFHKQYSGKKDIIDSIPFHPYFTVKDIMGVCGFLILFCGVIFFMPEGGGYFLEAPNFEPA
EEECCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCEEEECCCCCCC
NGLKTPTHIAPVWYYTPFYAILRAIPDKLIGVMFFGGSIVILFFLPWLDRCKVRSIRYRS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
WIHKANIAQFIVCFIVLGVLGALPATPLLTMFAQVGTVGYFGFFIALWLYSKNEKTKPLP
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
TRLTFK
CCCCCC
>Mature Secondary Structure
MLNKLVTGTVDWIDARIPMTETWNKHLAQYPTPANFNFWYFFGGLAMLVLVNQILTGIWL
CCCCHHCCCHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEE
TMHYNPSAELAFASVEYIMRDVPYGWLLRYMHSTGASAFFVVIYLHMFRGLIYGSYQKPR
EEEECCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHH
ELIWIFGMLIFLVLMAEAFMGYLLPWGQMSFWGAQVIISLFGAIPIIGDDLTLWIRGDYV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEECCCEEEEEECCEE
ISGATLNRFFALHVIALPLALVALVFLHLIALHEVGSNNPDGIDTKVKKGTASADAKGKF
EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCE
TFHKQYSGKKDIIDSIPFHPYFTVKDIMGVCGFLILFCGVIFFMPEGGGYFLEAPNFEPA
EEECCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCEEEECCCCCCC
NGLKTPTHIAPVWYYTPFYAILRAIPDKLIGVMFFGGSIVILFFLPWLDRCKVRSIRYRS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
WIHKANIAQFIVCFIVLGVLGALPATPLLTMFAQVGTVGYFGFFIALWLYSKNEKTKPLP
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
TRLTFK
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: QH2; ferricytochrome c

Specific reaction: QH2 + 2 ferricytochrome c = Q + 2 ferrocytochrome c

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA