Click here to switch to the map view.

The map label for this gene is nocM [H]

Identifier: 119946456

GI number: 119946456

Start: 3479708

End: 3480382

Strand: Reverse

Name: nocM [H]

Synonym: Ping_2831

Alternate gene names: 119946456

Gene position: 3480382-3479708 (Counterclockwise)

Preceding gene: 119946457

Following gene: 119946455

Centisome position: 76.33

GC content: 43.56

Gene sequence:

>675_bases
ATGGATTTTTCAATATTTATTAACGAATACCAGTTTTACCTTGCGGGTTTATGGACAACGGTGTGGTTAGTGGCACTTTC
ATTGTTATTGGGGCTGTTTATTGCGGTTCCGGTAGGGCTTCTGCGCAGTAGTGAAAACTGGTTGATTAAGGGGCCTGCCT
GGTCTTTTATGTACTTTTTTCGGGGAACCCCCCTGTTGGTGCAACTGTTTCTTATTTATTACGGTGCGGCACAGTTTGAC
TTGATCCATGAAACTTGGTTATGGCACTATTTCCAGGAAGCGTGGTTTTGCGCTCTATTGGCTTTTACACTGAATACGGG
GGCTTATACTGCTGAAATAATAAGGGGTGTTATCTCGACAATGCCAAAATCTGAGTTAGAAGCCGCTAAAGCCTACGGTA
TGAGTGAACGTCAAATTTTACGCCGTATCACCCTGCCAAATTCACTACGTCGTGCGCTGCCGGCTTACAGTAACGAAATT
ATCTTTATGATTCATGGTAGTGCTATTGCCGGCATCGTCACTATTGTTGATATCACTGGTGCTGCGCGGGTAGTCAATGC
GCGTTATTATGCACCCTTTGAGGCTTATTTTGGGGCGGCTTTATTATATATGTGCCTGACATTCTCAGTCATTTTTGCTT
TTAAAAAATGGGAAAGCCGTTACTCAACTCGTTAA

Upstream 100 bases:

>100_bases
TTTATATCGCCATTGCGCTGGTTTTTCTTTTTTTTACGTCTGTTTCCAGTCTCCTTTTTAGTTGGGCTGAACGTAAATAT
ACAATTAAAACGAGGTAGAG

Downstream 100 bases:

>100_bases
ATTTTATTTAGTCTCCAGTCAAAAGCAGAAGTAAAATGCAGGTTATTTGCATTTTACTCTGTCCAAACCACTCTTTAATA
AAATCTATTTGCACGTTTCT

Product: ABC polar amino acid transporter inner membrane protein

Products: ADP; phosphate; L-histidine [Cytoplasm]; ADP; L-ornithine [Cytoplasm]; L-arginine [Cytoplasm]; L-lysine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MDFSIFINEYQFYLAGLWTTVWLVALSLLLGLFIAVPVGLLRSSENWLIKGPAWSFMYFFRGTPLLVQLFLIYYGAAQFD
LIHETWLWHYFQEAWFCALLAFTLNTGAYTAEIIRGVISTMPKSELEAAKAYGMSERQILRRITLPNSLRRALPAYSNEI
IFMIHGSAIAGIVTIVDITGAARVVNARYYAPFEAYFGAALLYMCLTFSVIFAFKKWESRYSTR

Sequences:

>Translated_224_residues
MDFSIFINEYQFYLAGLWTTVWLVALSLLLGLFIAVPVGLLRSSENWLIKGPAWSFMYFFRGTPLLVQLFLIYYGAAQFD
LIHETWLWHYFQEAWFCALLAFTLNTGAYTAEIIRGVISTMPKSELEAAKAYGMSERQILRRITLPNSLRRALPAYSNEI
IFMIHGSAIAGIVTIVDITGAARVVNARYYAPFEAYFGAALLYMCLTFSVIFAFKKWESRYSTR
>Mature_224_residues
MDFSIFINEYQFYLAGLWTTVWLVALSLLLGLFIAVPVGLLRSSENWLIKGPAWSFMYFFRGTPLLVQLFLIYYGAAQFD
LIHETWLWHYFQEAWFCALLAFTLNTGAYTAEIIRGVISTMPKSELEAAKAYGMSERQILRRITLPNSLRRALPAYSNEI
IFMIHGSAIAGIVTIVDITGAARVVNARYYAPFEAYFGAALLYMCLTFSVIFAFKKWESRYSTR

Specific function: Component of the nopaline active transport system probably consisting of four subunits:Q, M, P and T. This system is also capable of transporting octopine provided that catabolic functions are induced with nopaline [H]

COG id: COG4160

COG function: function code E; ABC-type arginine/histidine transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788645, Length=215, Percent_Identity=42.7906976744186, Blast_Score=167, Evalue=4e-43,
Organism=Escherichia coli, GI1787086, Length=192, Percent_Identity=35.4166666666667, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI1788226, Length=202, Percent_Identity=32.1782178217822, Blast_Score=110, Evalue=8e-26,
Organism=Escherichia coli, GI1787030, Length=222, Percent_Identity=27.027027027027, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI1787087, Length=229, Percent_Identity=21.8340611353712, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786874, Length=194, Percent_Identity=25.7731958762887, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1788646, Length=212, Percent_Identity=26.8867924528302, Blast_Score=71, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 25664; Mature: 25664

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFSIFINEYQFYLAGLWTTVWLVALSLLLGLFIAVPVGLLRSSENWLIKGPAWSFMYFF
CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHH
RGTPLLVQLFLIYYGAAQFDLIHETWLWHYFQEAWFCALLAFTLNTGAYTAEIIRGVIST
CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
MPKSELEAAKAYGMSERQILRRITLPNSLRRALPAYSNEIIFMIHGSAIAGIVTIVDITG
CCHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHCC
AARVVNARYYAPFEAYFGAALLYMCLTFSVIFAFKKWESRYSTR
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDFSIFINEYQFYLAGLWTTVWLVALSLLLGLFIAVPVGLLRSSENWLIKGPAWSFMYFF
CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHH
RGTPLLVQLFLIYYGAAQFDLIHETWLWHYFQEAWFCALLAFTLNTGAYTAEIIRGVIST
CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
MPKSELEAAKAYGMSERQILRRITLPNSLRRALPAYSNEIIFMIHGSAIAGIVTIVDITG
CCHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHCC
AARVVNARYYAPFEAYFGAALLYMCLTFSVIFAFKKWESRYSTR
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; L-histidine [Periplasm]; H2O; ATP; L-ornithine [Periplasm]; L-arginine [Periplasm]; L-lysine [Periplasm] [C]

Specific reaction: ATP + L-histidine [Periplasm] + H2O = ADP + phosphate + L-histidine [Cytoplasm] ATP + L-ornithine [Periplasm] + H2O = ADP + phosphate + L-ornithine [Cytoplasm] ATP + L-arginine [Periplasm] + H2O = ADP + phosphate + L-arginine [Cytoplasm] ATP + L-lysine [P

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1732218; 11743193; 11743194 [H]