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The map label for this gene is rbsC [H]

Identifier: 119946433

GI number: 119946433

Start: 3453873

End: 3454889

Strand: Reverse

Name: rbsC [H]

Synonym: Ping_2807

Alternate gene names: 119946433

Gene position: 3454889-3453873 (Counterclockwise)

Preceding gene: 119946434

Following gene: 119946432

Centisome position: 75.77

GC content: 43.85

Gene sequence:

>1017_bases
ATGATGAATACTACTACAAAGAGTTCAACTGCACCTGCTGCTTTAACAAAATTAGCAGCTCAAAAAAATAAATTTTCTCT
GCGTCTGATGCTTAAAACCGTTGGCATGTTACCTGTTCTCATTATTTTGTGTATCGGTTTTGAAATGCTGAGCGGGCGTT
TTATGTCCTGGAGTAACCTGTCGATCGTTGCCCAGCAGGCTTCAATAAATACGGTATTAGCCGCAGGCATGACTTTTGTT
ATTTTAACTGGCGGGATAGATTTATCGGTTGGTTCGATACTTGCCGCTTCGGCAATGGTTGCGGTGATCGTCTCCAAATT
TCCTGAACTGGGTATGCTCGGCATTCCCGCTGCGCTGTTAGTTGGTACATTTTTTGGACTGTTAAACGGCAGCCTCATTG
CTTATCTAAAGTTACCTCCTTTTATTGTCACTCTGGGGGCTTTGACGGCAGTACGAGGAATTGCAAGGTTAATGGGCAAC
GATACGACTGTTTTTAACCCTGATATGCCCTTTGATTTTATTGGTAACGGTACTCTTTTTGGCATCCCCTGGTTGATTAT
TATCGCATTCTTCGTCGTTATCGTCTCCTGGTTTATATTAAAAAGAACAGTGTTAGGTATCCATATTTATTCTGTAGGGG
GTAATGAGAATGCGGCAAGACTGTCAGGTATTAAAGTTGCCGGCGTATTACTTTTTGCTTACGGAATGTCAGGACTACTT
TCCGGGCTAGGCGGGGTTATGTCAGCTGCCCGTCTGTATGCAGCTAATGGTACACAGCTAGGTACCGCCTACGAACTTGA
TGCGATCGCGGCCGTTATTTTGGGTGGTACCAGCTTTGTTGGAGGAATAGGGTCGATTTGGGGAACTTTAATTGGGGCAT
TAATTATCGCCGTGCTGACTAACGGGCTGGTTCTAACCGGGGTTCCTGATGTTTGGCAATATATTATCAAAGGCTTAATT
ATTATCGGTGCTGTGGCTTTAGACCGTTATCGTTTACAGGGCAATACAAGAACATAA

Upstream 100 bases:

>100_bases
AATTGACACATGGAAAAGATGAACTCAATCAAAACAATATTATGAAGCTGGCCGCTGGTGCCTAGACAGTTGTTTTTTAC
TAAAATTAAGAAAGAGAGTC

Downstream 100 bases:

>100_bases
AAGATTAACTAACAGTTTACCCACGGGTCGCCATAAAACGGTGGCAACCCAACTACTTGAATGAAAAATGGAGATTACAA
TGAAAGGCTTAAAATATTTG

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MMNTTTKSSTAPAALTKLAAQKNKFSLRLMLKTVGMLPVLIILCIGFEMLSGRFMSWSNLSIVAQQASINTVLAAGMTFV
ILTGGIDLSVGSILAASAMVAVIVSKFPELGMLGIPAALLVGTFFGLLNGSLIAYLKLPPFIVTLGALTAVRGIARLMGN
DTTVFNPDMPFDFIGNGTLFGIPWLIIIAFFVVIVSWFILKRTVLGIHIYSVGGNENAARLSGIKVAGVLLFAYGMSGLL
SGLGGVMSAARLYAANGTQLGTAYELDAIAAVILGGTSFVGGIGSIWGTLIGALIIAVLTNGLVLTGVPDVWQYIIKGLI
IIGAVALDRYRLQGNTRT

Sequences:

>Translated_338_residues
MMNTTTKSSTAPAALTKLAAQKNKFSLRLMLKTVGMLPVLIILCIGFEMLSGRFMSWSNLSIVAQQASINTVLAAGMTFV
ILTGGIDLSVGSILAASAMVAVIVSKFPELGMLGIPAALLVGTFFGLLNGSLIAYLKLPPFIVTLGALTAVRGIARLMGN
DTTVFNPDMPFDFIGNGTLFGIPWLIIIAFFVVIVSWFILKRTVLGIHIYSVGGNENAARLSGIKVAGVLLFAYGMSGLL
SGLGGVMSAARLYAANGTQLGTAYELDAIAAVILGGTSFVGGIGSIWGTLIGALIIAVLTNGLVLTGVPDVWQYIIKGLI
IIGAVALDRYRLQGNTRT
>Mature_338_residues
MMNTTTKSSTAPAALTKLAAQKNKFSLRLMLKTVGMLPVLIILCIGFEMLSGRFMSWSNLSIVAQQASINTVLAAGMTFV
ILTGGIDLSVGSILAASAMVAVIVSKFPELGMLGIPAALLVGTFFGLLNGSLIAYLKLPPFIVTLGALTAVRGIARLMGN
DTTVFNPDMPFDFIGNGTLFGIPWLIIIAFFVVIVSWFILKRTVLGIHIYSVGGNENAARLSGIKVAGVLLFAYGMSGLL
SGLGGVMSAARLYAANGTQLGTAYELDAIAAVILGGTSFVGGIGSIWGTLIGALIIAVLTNGLVLTGVPDVWQYIIKGLI
IIGAVALDRYRLQGNTRT

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4158

COG function: function code R; Predicted ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=321, Percent_Identity=39.8753894080997, Blast_Score=184, Evalue=1e-47,
Organism=Escherichia coli, GI1790524, Length=318, Percent_Identity=38.3647798742138, Blast_Score=165, Evalue=3e-42,
Organism=Escherichia coli, GI145693152, Length=339, Percent_Identity=33.3333333333333, Blast_Score=151, Evalue=6e-38,
Organism=Escherichia coli, GI1788896, Length=322, Percent_Identity=34.7826086956522, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1788471, Length=330, Percent_Identity=37.2727272727273, Blast_Score=131, Evalue=7e-32,
Organism=Escherichia coli, GI145693214, Length=260, Percent_Identity=37.3076923076923, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI87082395, Length=312, Percent_Identity=31.7307692307692, Blast_Score=121, Evalue=7e-29,
Organism=Escherichia coli, GI1789992, Length=131, Percent_Identity=45.8015267175573, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1787793, Length=299, Percent_Identity=32.4414715719064, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1787794, Length=315, Percent_Identity=29.8412698412698, Blast_Score=91, Evalue=8e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35307; Mature: 35307

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNTTTKSSTAPAALTKLAAQKNKFSLRLMLKTVGMLPVLIILCIGFEMLSGRFMSWSNL
CCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
SIVAQQASINTVLAAGMTFVILTGGIDLSVGSILAASAMVAVIVSKFPELGMLGIPAALL
EEEEEHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
VGTFFGLLNGSLIAYLKLPPFIVTLGALTAVRGIARLMGNDTTVFNPDMPFDFIGNGTLF
HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCH
GIPWLIIIAFFVVIVSWFILKRTVLGIHIYSVGGNENAARLSGIKVAGVLLFAYGMSGLL
HHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCHHHCCHHHHHHHHHHHHHHHHH
SGLGGVMSAARLYAANGTQLGTAYELDAIAAVILGGTSFVGGIGSIWGTLIGALIIAVLT
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
NGLVLTGVPDVWQYIIKGLIIIGAVALDRYRLQGNTRT
CCEEEECCHHHHHHHHHHHHHHHHHHHHHHEECCCCCC
>Mature Secondary Structure
MMNTTTKSSTAPAALTKLAAQKNKFSLRLMLKTVGMLPVLIILCIGFEMLSGRFMSWSNL
CCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
SIVAQQASINTVLAAGMTFVILTGGIDLSVGSILAASAMVAVIVSKFPELGMLGIPAALL
EEEEEHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
VGTFFGLLNGSLIAYLKLPPFIVTLGALTAVRGIARLMGNDTTVFNPDMPFDFIGNGTLF
HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCH
GIPWLIIIAFFVVIVSWFILKRTVLGIHIYSVGGNENAARLSGIKVAGVLLFAYGMSGLL
HHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCHHHCCHHHHHHHHHHHHHHHHH
SGLGGVMSAARLYAANGTQLGTAYELDAIAAVILGGTSFVGGIGSIWGTLIGALIIAVLT
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
NGLVLTGVPDVWQYIIKGLIIIGAVALDRYRLQGNTRT
CCEEEECCHHHHHHHHHHHHHHHHHHHHHHEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]