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The map label for this gene is hdfR [H]

Identifier: 119946385

GI number: 119946385

Start: 3384743

End: 3385591

Strand: Reverse

Name: hdfR [H]

Synonym: Ping_2759

Alternate gene names: 119946385

Gene position: 3385591-3384743 (Counterclockwise)

Preceding gene: 119946387

Following gene: 119946383

Centisome position: 74.25

GC content: 38.63

Gene sequence:

>849_bases
ATGAAAATTGAATTGCTTAAAACATTTTTAGAGGTCAGCCGAACGCTGCATTTTCGTTTGGCGTCTGAATCTTTATTTAT
CACTCAATCTGCAGTGAGTGCAAGAATTAAACTGCTTGAAGATGAGCTAGGAGTACTATTATTTGATCGCCGTCAAAAGC
ATCTTAAATTAACACCGGCAGGGCATCGTTTAATTAAACATGCGAACGAAATTATTTTTATGTGGCAAAAAGCGAAACAA
GATGTCGGTGTTTCAGGCCAGAAAACCACACAGTTAGCGATCGGTTCAATGATGTCTATTTGGGATGTTATTTTACAGAC
CTGGTTACAAAAAATACATCGAAACATGGGGGAGATTAGCTTGTTAACCAATGCCAGTTCGCCCCTTGAGTTACGCAAAA
GTGTTTTAAACCGTGTTACTGATATCGCCTTTTTGTTTGAACCTCCCTTTGTTGAAGAACTGGTAACGGAAAAGGTAGCG
GCAGTACCACTGCATCTTGTTTCAACACAATCTAATATTGATATAAAAACCCAGAATTTAAATGATTATGTCATGGTTGA
TTATGGTGAATCAGTCAATACTCAGTATCTGAGAGAGTTTAAAAATGCACCGCCTGCAAAACATTTTATGAGCCAACCTC
GTGTTGCATTAGAGTATATCTTAGAAGCTGGGGGCTGTGCCTATTTGCCTCGGCAGATGGTTATCGATCATCTTCGCAGC
GAAAAACTCACCCTTATTAAAGATGCACCGGTATATTCTCGGGAAATATTTGCTATTTATCTGGCGAAAAGTCATAAAGC
AGATGTTATCAATCAGGCAATCCAATACTTTCCGGAGATTACTTATTAA

Upstream 100 bases:

>100_bases
CCACTTATTATTTTTAGTATGACTGCAACAATAGAGGTACAATAAATCATAATTTTGATTGTTTGATAAAAAAAATTGAT
TAATTGAGAGTTGCCAGTAA

Downstream 100 bases:

>100_bases
TAAACGCTTTCATTGATGCCGTTTGTGAATGTTGCAACGGCAAAAATGAAAGTTGACTGACTTAAGTCAGAAATAAGGCA
CCTAAGCCTAAAAAGGTAAT

Product: transcriptional regulator of LysR family protein

Products: NA

Alternate protein names: H-NS-dependent flhDC regulator [H]

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MKIELLKTFLEVSRTLHFRLASESLFITQSAVSARIKLLEDELGVLLFDRRQKHLKLTPAGHRLIKHANEIIFMWQKAKQ
DVGVSGQKTTQLAIGSMMSIWDVILQTWLQKIHRNMGEISLLTNASSPLELRKSVLNRVTDIAFLFEPPFVEELVTEKVA
AVPLHLVSTQSNIDIKTQNLNDYVMVDYGESVNTQYLREFKNAPPAKHFMSQPRVALEYILEAGGCAYLPRQMVIDHLRS
EKLTLIKDAPVYSREIFAIYLAKSHKADVINQAIQYFPEITY

Sequences:

>Translated_282_residues
MKIELLKTFLEVSRTLHFRLASESLFITQSAVSARIKLLEDELGVLLFDRRQKHLKLTPAGHRLIKHANEIIFMWQKAKQ
DVGVSGQKTTQLAIGSMMSIWDVILQTWLQKIHRNMGEISLLTNASSPLELRKSVLNRVTDIAFLFEPPFVEELVTEKVA
AVPLHLVSTQSNIDIKTQNLNDYVMVDYGESVNTQYLREFKNAPPAKHFMSQPRVALEYILEAGGCAYLPRQMVIDHLRS
EKLTLIKDAPVYSREIFAIYLAKSHKADVINQAIQYFPEITY
>Mature_282_residues
MKIELLKTFLEVSRTLHFRLASESLFITQSAVSARIKLLEDELGVLLFDRRQKHLKLTPAGHRLIKHANEIIFMWQKAKQ
DVGVSGQKTTQLAIGSMMSIWDVILQTWLQKIHRNMGEISLLTNASSPLELRKSVLNRVTDIAFLFEPPFVEELVTEKVA
AVPLHLVSTQSNIDIKTQNLNDYVMVDYGESVNTQYLREFKNAPPAKHFMSQPRVALEYILEAGGCAYLPRQMVIDHLRS
EKLTLIKDAPVYSREIFAIYLAKSHKADVINQAIQYFPEITY

Specific function: Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI48994962, Length=273, Percent_Identity=30.7692307692308, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1787601, Length=164, Percent_Identity=29.2682926829268, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020890
- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32281; Mature: 32281

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIELLKTFLEVSRTLHFRLASESLFITQSAVSARIKLLEDELGVLLFDRRQKHLKLTPA
CHHHHHHHHHHHHHHHHEEEECCEEEEEHHHHHHHHHHHHHHHCEEEEECCCCCEEECCH
GHRLIKHANEIIFMWQKAKQDVGVSGQKTTQLAIGSMMSIWDVILQTWLQKIHRNMGEIS
HHHHHHHHHHHEEEEHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
LLTNASSPLELRKSVLNRVTDIAFLFEPPFVEELVTEKVAAVPLHLVSTQSNIDIKTQNL
EEECCCCCHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHEEECCCCCEEEECCC
NDYVMVDYGESVNTQYLREFKNAPPAKHFMSQPRVALEYILEAGGCAYLPRQMVIDHLRS
CCEEEEECCCCCCHHHHHHHHCCCCHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHCC
EKLTLIKDAPVYSREIFAIYLAKSHKADVINQAIQYFPEITY
CCEEEEECCCCCHHHEEEEEEECCCCHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKIELLKTFLEVSRTLHFRLASESLFITQSAVSARIKLLEDELGVLLFDRRQKHLKLTPA
CHHHHHHHHHHHHHHHHEEEECCEEEEEHHHHHHHHHHHHHHHCEEEEECCCCCEEECCH
GHRLIKHANEIIFMWQKAKQDVGVSGQKTTQLAIGSMMSIWDVILQTWLQKIHRNMGEIS
HHHHHHHHHHHEEEEHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
LLTNASSPLELRKSVLNRVTDIAFLFEPPFVEELVTEKVAAVPLHLVSTQSNIDIKTQNL
EEECCCCCHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHEEECCCCCEEEECCC
NDYVMVDYGESVNTQYLREFKNAPPAKHFMSQPRVALEYILEAGGCAYLPRQMVIDHLRS
CCEEEEECCCCCCHHHHHHHHCCCCHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHCC
EKLTLIKDAPVYSREIFAIYLAKSHKADVINQAIQYFPEITY
CCEEEEECCCCCHHHEEEEEEECCCCHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA