| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is 119946317
Identifier: 119946317
GI number: 119946317
Start: 3292586
End: 3293539
Strand: Reverse
Name: 119946317
Synonym: Ping_2687
Alternate gene names: NA
Gene position: 3293539-3292586 (Counterclockwise)
Preceding gene: 119946318
Following gene: 119946316
Centisome position: 72.23
GC content: 36.69
Gene sequence:
>954_bases ATGGGATTCTTTTCAAGTTTATTCGGTGCAGTATTAACTGTTGCTGCTACAGTCGTAAATGTAGCGGTTAAAGCTACAAG TGAAATAATAAATGCTGCAGCCGACTTTCTAGATGAATTTACTAAGAAAAAAGAGAAAGATAAGTTACCGGAGGCTGAAG AAACAAAATATAAAGCAGATGATGAATTAAAAAATATTAATGATGAGTTATTGGCTATTTTAGATAAGTACCAACGTAAT GGGAGAGTCTCTTTGCCTGAAAAACGCAGGGCTGAGTATTTACGAGATAGGCGAAATGAATTAAAAGGAGCAATTAAAAG CTCTGATGAAATTATCAGTACAACAGAAATAGTTACGGATTCAGAAGCATTTAAGAAAATATCTGTTGGAGATAAAGAAG CCCATATAATACAAGGACAAGTAGGAGTATCTTCTTTCGGTAAAAGCTGCTCTCAATGTGGGAGAGAGATGCAAATACAA TGGCCTAGAACAGTCAAAACTGCGAGCGTCGGTGATTTTTTTTGGGGGTGTACAGGTTGGTTCTTTTTTGATAATCAGGG GCATCGCCGTTGTCAACACACTGAAAAAATGAGTTCGGGAGATTTAAGCATTTTCACAAGAAGTGATAATCCAGAAGCTG AGGTTAGTAATGACGAATTGACAACGTTAGTTACGATGCCCGAACCCTCAAAAATAATAACAGAAAGAATGGACGATGTT ATTTCAGATCAAAAAAGTCAAAGAAGAGGAACGAATGATTACCGTTGCCCTGTTCATGGAGAGCTACTTGTTTTAAGAAG GAAAAAAAATGCAGTAGGGTTATTGGACCAATATTTTCTAGGGTGCTCTCATTGGAAACCAAATAATACTGGGTGCTCTT ACATTGTAAAATTAAAATCAGTTATGCAATTATCAAACTTACTAGCTAAAGAGTCGGGTACTGGCGTTCTGTAA
Upstream 100 bases:
>100_bases AAACTCGCTCACAAACTATAACTTTGATAAAACAACTTATCGGCTTAAATGCTATAGAAGTTATCAACAACAATTAATTT TAAACAATAGGTAGTCAGTT
Downstream 100 bases:
>100_bases GAGGTTCGTTCGCAGAGTAAAAGTAAGAGGGGAGTAGTGCCACGTCTTGCTTAAACTATAAAAATTCCTCTATCCCCATA ACGGCAGACTACTCACCGTT
Product: ribosome recycling factor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 317; Mature: 316
Protein sequence:
>317_residues MGFFSSLFGAVLTVAATVVNVAVKATSEIINAAADFLDEFTKKKEKDKLPEAEETKYKADDELKNINDELLAILDKYQRN GRVSLPEKRRAEYLRDRRNELKGAIKSSDEIISTTEIVTDSEAFKKISVGDKEAHIIQGQVGVSSFGKSCSQCGREMQIQ WPRTVKTASVGDFFWGCTGWFFFDNQGHRRCQHTEKMSSGDLSIFTRSDNPEAEVSNDELTTLVTMPEPSKIITERMDDV ISDQKSQRRGTNDYRCPVHGELLVLRRKKNAVGLLDQYFLGCSHWKPNNTGCSYIVKLKSVMQLSNLLAKESGTGVL
Sequences:
>Translated_317_residues MGFFSSLFGAVLTVAATVVNVAVKATSEIINAAADFLDEFTKKKEKDKLPEAEETKYKADDELKNINDELLAILDKYQRN GRVSLPEKRRAEYLRDRRNELKGAIKSSDEIISTTEIVTDSEAFKKISVGDKEAHIIQGQVGVSSFGKSCSQCGREMQIQ WPRTVKTASVGDFFWGCTGWFFFDNQGHRRCQHTEKMSSGDLSIFTRSDNPEAEVSNDELTTLVTMPEPSKIITERMDDV ISDQKSQRRGTNDYRCPVHGELLVLRRKKNAVGLLDQYFLGCSHWKPNNTGCSYIVKLKSVMQLSNLLAKESGTGVL >Mature_316_residues GFFSSLFGAVLTVAATVVNVAVKATSEIINAAADFLDEFTKKKEKDKLPEAEETKYKADDELKNINDELLAILDKYQRNG RVSLPEKRRAEYLRDRRNELKGAIKSSDEIISTTEIVTDSEAFKKISVGDKEAHIIQGQVGVSSFGKSCSQCGREMQIQW PRTVKTASVGDFFWGCTGWFFFDNQGHRRCQHTEKMSSGDLSIFTRSDNPEAEVSNDELTTLVTMPEPSKIITERMDDVI SDQKSQRRGTNDYRCPVHGELLVLRRKKNAVGLLDQYFLGCSHWKPNNTGCSYIVKLKSVMQLSNLLAKESGTGVL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35553; Mature: 35421
Theoretical pI: Translated: 7.39; Mature: 7.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGFFSSLFGAVLTVAATVVNVAVKATSEIINAAADFLDEFTKKKEKDKLPEAEETKYKAD CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCC DELKNINDELLAILDKYQRNGRVSLPEKRRAEYLRDRRNELKGAIKSSDEIISTTEIVTD HHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC SEAFKKISVGDKEAHIIQGQVGVSSFGKSCSQCGREMQIQWPRTVKTASVGDFFWGCTGW HHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHCCEE FFFDNQGHRRCQHTEKMSSGDLSIFTRSDNPEAEVSNDELTTLVTMPEPSKIITERMDDV EEECCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHH ISDQKSQRRGTNDYRCPVHGELLVLRRKKNAVGLLDQYFLGCSHWKPNNTGCSYIVKLKS HHHHHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH VMQLSNLLAKESGTGVL HHHHHHHHHHCCCCCCC >Mature Secondary Structure GFFSSLFGAVLTVAATVVNVAVKATSEIINAAADFLDEFTKKKEKDKLPEAEETKYKAD CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCC DELKNINDELLAILDKYQRNGRVSLPEKRRAEYLRDRRNELKGAIKSSDEIISTTEIVTD HHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC SEAFKKISVGDKEAHIIQGQVGVSSFGKSCSQCGREMQIQWPRTVKTASVGDFFWGCTGW HHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHCCEE FFFDNQGHRRCQHTEKMSSGDLSIFTRSDNPEAEVSNDELTTLVTMPEPSKIITERMDDV EEECCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHH ISDQKSQRRGTNDYRCPVHGELLVLRRKKNAVGLLDQYFLGCSHWKPNNTGCSYIVKLKS HHHHHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH VMQLSNLLAKESGTGVL HHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA