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The map label for this gene is xerC [C]

Identifier: 119946209

GI number: 119946209

Start: 3148646

End: 3149242

Strand: Direct

Name: xerC [C]

Synonym: Ping_2569

Alternate gene names: 119946209

Gene position: 3148646-3149242 (Clockwise)

Preceding gene: 119946206

Following gene: 119946210

Centisome position: 69.06

GC content: 35.18

Gene sequence:

>597_bases
ATGAAAGCTTGGAATAAAGGTAAACGGGTTGGTCAGAAAAAAGCGTTTAAACTAGAAGATATTTGGAGGATTAGAATTCG
TTTAGAATTAGAACATAACCTCGAACAATTAGTCATATTTAACTTGGCAATTGACAGTAAGCTCCGCTCTAGCGATTTAA
TTCAACTCAAAGTACGTGATATATCTTCTAGTTCATTAATTCAATCCCGGGCCATAATTGAACAAAAGAAAACTCATCGT
GAAGTCCAATTTGAAATAACACCTAAAACTCAACAATGTCTAACTCTCTGGATACATAACCAGAACTTAACTCCCTCGGA
TTATTTATTTCCGAGCCCACGAAAGGAAGGTAGTCATATAAGTTATCACTATTATTCAGGAATAGTTAAGCAATGGGTAA
AAAAATTGGGGTTAGATTTAACCCAATATAACACTCATTCGCTCAGGAGAACGAAAGCATCATTAATTTATGCAAAGACG
AAAAACCTTCGGGCAATACAATTATTACTGGGGCATTCAAAATTGGAAAGCACGATTGAATACTTGGGAGTTGAAATCGA
AGACGCATTAACTATTTCAGAAGCAACAGAAACGTAA

Upstream 100 bases:

>100_bases
ATAGAAATGACTTTACACAGATAATTTGAGCATTTAAAAATTGTATTATAAATGGCAGCGCTTAAAGCTTACTACGACAT
TTATATAAAAGGAGAATGTT

Downstream 100 bases:

>100_bases
TTATTAATGATTTAGTTAGGCGAAAGATTGTTGCATACATCACTTTCGCCTCAATTTGATCAAACTTTAGACTAATTATC
TGTATCACTTAAGTATTACT

Product: phage integrase family protein

Products: NA

Alternate protein names: Phage Integrase Family Protein; Phage Integrase; Site-Specific Recombinase Phage Integrase Family; Phage Integrase Family Site Specific Recombinase; Integrase; DNA Integration/Recombination/Inversion Protein; Tyrosine Recombinase XerD; Recombinase; Phage Integrase/Recombinase; Site-Specific Recombinase Phage Integrase Family Protein; Phage Integrase Protein; Site-Specific Recombinase; Truncated Site-Specific Recombinase; DNA Integration/Recombination/Invertion Protein; Transposase; Fragmented Site-Specific Recombinase XerC/XerD

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MKAWNKGKRVGQKKAFKLEDIWRIRIRLELEHNLEQLVIFNLAIDSKLRSSDLIQLKVRDISSSSLIQSRAIIEQKKTHR
EVQFEITPKTQQCLTLWIHNQNLTPSDYLFPSPRKEGSHISYHYYSGIVKQWVKKLGLDLTQYNTHSLRRTKASLIYAKT
KNLRAIQLLLGHSKLESTIEYLGVEIEDALTISEATET

Sequences:

>Translated_198_residues
MKAWNKGKRVGQKKAFKLEDIWRIRIRLELEHNLEQLVIFNLAIDSKLRSSDLIQLKVRDISSSSLIQSRAIIEQKKTHR
EVQFEITPKTQQCLTLWIHNQNLTPSDYLFPSPRKEGSHISYHYYSGIVKQWVKKLGLDLTQYNTHSLRRTKASLIYAKT
KNLRAIQLLLGHSKLESTIEYLGVEIEDALTISEATET
>Mature_198_residues
MKAWNKGKRVGQKKAFKLEDIWRIRIRLELEHNLEQLVIFNLAIDSKLRSSDLIQLKVRDISSSSLIQSRAIIEQKKTHR
EVQFEITPKTQQCLTLWIHNQNLTPSDYLFPSPRKEGSHISYHYYSGIVKQWVKKLGLDLTQYNTHSLRRTKASLIYAKT
KNLRAIQLLLGHSKLESTIEYLGVEIEDALTISEATET

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerd Binding Sites By A Short Central Region, Forming

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23043; Mature: 23043

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAWNKGKRVGQKKAFKLEDIWRIRIRLELEHNLEQLVIFNLAIDSKLRSSDLIQLKVRD
CCCCCCHHHCCHHHCCCCCCEEEEEEEEEECCCCCEEEEEEEEECCCCCCCCEEEEEEEC
ISSSSLIQSRAIIEQKKTHREVQFEITPKTQQCLTLWIHNQNLTPSDYLFPSPRKEGSHI
CCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHEEEEEEECCCCCCCCCCCCCCCCCCCEE
SYHYYSGIVKQWVKKLGLDLTQYNTHSLRRTKASLIYAKTKNLRAIQLLLGHSKLESTIE
EHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHEEEEECCCCEEEHHHHHHHHHHHHHH
YLGVEIEDALTISEATET
HHCCCHHHHEEECCCCCC
>Mature Secondary Structure
MKAWNKGKRVGQKKAFKLEDIWRIRIRLELEHNLEQLVIFNLAIDSKLRSSDLIQLKVRD
CCCCCCHHHCCHHHCCCCCCEEEEEEEEEECCCCCEEEEEEEEECCCCCCCCEEEEEEEC
ISSSSLIQSRAIIEQKKTHREVQFEITPKTQQCLTLWIHNQNLTPSDYLFPSPRKEGSHI
CCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHEEEEEEECCCCCCCCCCCCCCCCCCCEE
SYHYYSGIVKQWVKKLGLDLTQYNTHSLRRTKASLIYAKTKNLRAIQLLLGHSKLESTIE
EHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHEEEEECCCCEEEHHHHHHHHHHHHHH
YLGVEIEDALTISEATET
HHCCCHHHHEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA