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The map label for this gene is yciR [C]

Identifier: 119946190

GI number: 119946190

Start: 3120371

End: 3121609

Strand: Direct

Name: yciR [C]

Synonym: Ping_2550

Alternate gene names: 119946190

Gene position: 3120371-3121609 (Clockwise)

Preceding gene: 119946189

Following gene: 119946191

Centisome position: 68.44

GC content: 42.53

Gene sequence:

>1239_bases
ATGAGCAAGAAAAAACACATTGCTAGCAAAAAGCTTTCTTTAAGTAAGGAAAATAAACTACTGCGTGAGAAGGCTGAACT
CATCGCGAGCAAAAAAATGGCGGCGCAGCCGGTGGATATCACCCGATTGAGTAGTGAGCAAATTGAGGGACTGCTCCATG
AGTTGAGCGTATTTCAGATAGAACTGGAGATACAAAATGAAAATTTGCTGACCGCCTATGAACAGCTGGAAGTTTCACGT
AAACGTTATATTCAGCTTTACAATTTAGCGCCTGTGGGATATTTTTCGCTGACCAAAAATGGCATTATACTCGAAGCTAA
CAACACCGGTAGCGAGTTATTAGCTTGCACTGTCTCCATCCTGCTACAATTACCCTTTGCTAAATTTATCTACCACGAAG
ACACCGATAAGTTTTACCTTTTTTGTAAAGAGATTATGAACACGCAGCAACCGCAGGTTTGTGAACTAAAAATTAATCGC
CACGACAACACCTCATTTTGGGGCTATCTGGTGGCGGCTTCAACCGTTGACGAACACGGTGAGCAGATCCTTTTTTTAGT
CTTAAATGATACGACTGAGCGACACAATCATGTTGATGAAATTAGCCGGCTGGCCTTTTTTGATCCGCTCACTGGCCTGC
CCAATCGGCGTTTATTGTTGGACAGACTTAACCACGCCGTTATATCAACCGATCGTAATGGAAAATTAGGGGCAGTAATG
ATGCTTGATCTGGACAACTTCAAGCAGCTCAATGATACAAAGGGGCACGCCGACGGCGATATGTTATTGCAGCAGATAGC
CATCCGGCTGCAGAAATGTGTGCGCAAAAATGACAGCTTGGCCCGTTTAGGGGGGGATGAATTTGTGGTCTTGCTGGAGG
GGCTAAGCGAAAATACAGTAGAGGCGAACAGCGAAGCTATGCATATAGCAAAGAAAATACAGCACGAATTTTCACTCCCA
TTTATATTCTGTGATTACACTCACTACATTACGGCGAGCATAGGCATAACAATATTTATGCAAAAAACAGAAAATGTAGA
CAACTTACTCAAAAATGCCGATGTGGCTATGTATAAGGCAAAGGCGGCGGGACGTAATAAAATATGTTTTTTTGAAGCCC
CTATGCAGACAATAACAGAGTCACATTCTCACATAGAAAAAGATCGGCATTACGCTCAGGAAGATAAAAAAATTCGTGCA
GCATTACCAGATTCAATAGAGAAAAATAACGCGAGGTAA

Upstream 100 bases:

>100_bases
CGCTCCTTGATGTCTCTGTCACCGCCACCGCACTGGTTAATGAATCCGACAATATGTATGCCGTAGTGAATATGGAACGT
CCATTAGAAGGTCAAAAATT

Downstream 100 bases:

>100_bases
AAACCCTGATCCGTTGGCATCATCCCTTGCTCAGTCTATTAACACCAGAATATTTACTCGCTTACTTTGACTGTAATAGC
GACCAGAGCTGCTATTTCTG

Product: diguanylate cyclase with PAS/PAC sensor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 411

Protein sequence:

>412_residues
MSKKKHIASKKLSLSKENKLLREKAELIASKKMAAQPVDITRLSSEQIEGLLHELSVFQIELEIQNENLLTAYEQLEVSR
KRYIQLYNLAPVGYFSLTKNGIILEANNTGSELLACTVSILLQLPFAKFIYHEDTDKFYLFCKEIMNTQQPQVCELKINR
HDNTSFWGYLVAASTVDEHGEQILFLVLNDTTERHNHVDEISRLAFFDPLTGLPNRRLLLDRLNHAVISTDRNGKLGAVM
MLDLDNFKQLNDTKGHADGDMLLQQIAIRLQKCVRKNDSLARLGGDEFVVLLEGLSENTVEANSEAMHIAKKIQHEFSLP
FIFCDYTHYITASIGITIFMQKTENVDNLLKNADVAMYKAKAAGRNKICFFEAPMQTITESHSHIEKDRHYAQEDKKIRA
ALPDSIEKNNAR

Sequences:

>Translated_412_residues
MSKKKHIASKKLSLSKENKLLREKAELIASKKMAAQPVDITRLSSEQIEGLLHELSVFQIELEIQNENLLTAYEQLEVSR
KRYIQLYNLAPVGYFSLTKNGIILEANNTGSELLACTVSILLQLPFAKFIYHEDTDKFYLFCKEIMNTQQPQVCELKINR
HDNTSFWGYLVAASTVDEHGEQILFLVLNDTTERHNHVDEISRLAFFDPLTGLPNRRLLLDRLNHAVISTDRNGKLGAVM
MLDLDNFKQLNDTKGHADGDMLLQQIAIRLQKCVRKNDSLARLGGDEFVVLLEGLSENTVEANSEAMHIAKKIQHEFSLP
FIFCDYTHYITASIGITIFMQKTENVDNLLKNADVAMYKAKAAGRNKICFFEAPMQTITESHSHIEKDRHYAQEDKKIRA
ALPDSIEKNNAR
>Mature_411_residues
SKKKHIASKKLSLSKENKLLREKAELIASKKMAAQPVDITRLSSEQIEGLLHELSVFQIELEIQNENLLTAYEQLEVSRK
RYIQLYNLAPVGYFSLTKNGIILEANNTGSELLACTVSILLQLPFAKFIYHEDTDKFYLFCKEIMNTQQPQVCELKINRH
DNTSFWGYLVAASTVDEHGEQILFLVLNDTTERHNHVDEISRLAFFDPLTGLPNRRLLLDRLNHAVISTDRNGKLGAVMM
LDLDNFKQLNDTKGHADGDMLLQQIAIRLQKCVRKNDSLARLGGDEFVVLLEGLSENTVEANSEAMHIAKKIQHEFSLPF
IFCDYTHYITASIGITIFMQKTENVDNLLKNADVAMYKAKAAGRNKICFFEAPMQTITESHSHIEKDRHYAQEDKKIRAA
LPDSIEKNNAR

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=198, Percent_Identity=36.8686868686869, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI1788381, Length=197, Percent_Identity=34.5177664974619, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI87081881, Length=201, Percent_Identity=30.3482587064677, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI87081977, Length=215, Percent_Identity=33.0232558139535, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1787262, Length=179, Percent_Identity=32.9608938547486, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI145693134, Length=179, Percent_Identity=31.8435754189944, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1788956, Length=163, Percent_Identity=36.8098159509202, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1786584, Length=162, Percent_Identity=32.7160493827161, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI1787816, Length=176, Percent_Identity=32.3863636363636, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787802, Length=133, Percent_Identity=36.0902255639098, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI87082007, Length=167, Percent_Identity=31.7365269461078, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI87081974, Length=115, Percent_Identity=33.9130434782609, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1788085, Length=167, Percent_Identity=31.1377245508982, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI87081921, Length=178, Percent_Identity=31.4606741573034, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 46954; Mature: 46823

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKKHIASKKLSLSKENKLLREKAELIASKKMAAQPVDITRLSSEQIEGLLHELSVFQI
CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHCEEEEE
ELEIQNENLLTAYEQLEVSRKRYIQLYNLAPVGYFSLTKNGIILEANNTGSELLACTVSI
EEEECCCCHHHHHHHHHHHHHHEEEEEECCCCCEEEECCCCEEEEECCCCHHHHHHHHHH
LLQLPFAKFIYHEDTDKFYLFCKEIMNTQQPQVCELKINRHDNTSFWGYLVAASTVDEHG
HHHCCHHHHHEECCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEEEEHHHHCCC
EQILFLVLNDTTERHNHVDEISRLAFFDPLTGLPNRRLLLDRLNHAVISTDRNGKLGAVM
CEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCEEECCCCCCEEEEE
MLDLDNFKQLNDTKGHADGDMLLQQIAIRLQKCVRKNDSLARLGGDEFVVLLEGLSENTV
EEECCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCEEEEEEECCCCCCC
EANSEAMHIAKKIQHEFSLPFIFCDYTHYITASIGITIFMQKTENVDNLLKNADVAMYKA
CCCHHHHHHHHHHHHHCCCCEEEECHHHHEEEECCEEEEEECCCCHHHHHHCCCHHEEEC
KAAGRNKICFFEAPMQTITESHSHIEKDRHYAQEDKKIRAALPDSIEKNNAR
CCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
SKKKHIASKKLSLSKENKLLREKAELIASKKMAAQPVDITRLSSEQIEGLLHELSVFQI
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHCEEEEE
ELEIQNENLLTAYEQLEVSRKRYIQLYNLAPVGYFSLTKNGIILEANNTGSELLACTVSI
EEEECCCCHHHHHHHHHHHHHHEEEEEECCCCCEEEECCCCEEEEECCCCHHHHHHHHHH
LLQLPFAKFIYHEDTDKFYLFCKEIMNTQQPQVCELKINRHDNTSFWGYLVAASTVDEHG
HHHCCHHHHHEECCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEEEEHHHHCCC
EQILFLVLNDTTERHNHVDEISRLAFFDPLTGLPNRRLLLDRLNHAVISTDRNGKLGAVM
CEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCEEECCCCCCEEEEE
MLDLDNFKQLNDTKGHADGDMLLQQIAIRLQKCVRKNDSLARLGGDEFVVLLEGLSENTV
EEECCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCEEEEEEECCCCCCC
EANSEAMHIAKKIQHEFSLPFIFCDYTHYITASIGITIFMQKTENVDNLLKNADVAMYKA
CCCHHHHHHHHHHHHHCCCCEEEECHHHHEEEECCEEEEEECCCCHHHHHHCCCHHEEEC
KAAGRNKICFFEAPMQTITESHSHIEKDRHYAQEDKKIRAALPDSIEKNNAR
CCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]