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The map label for this gene is cspV [H]

Identifier: 119946183

GI number: 119946183

Start: 3109657

End: 3109866

Strand: Reverse

Name: cspV [H]

Synonym: Ping_2543

Alternate gene names: 119946183

Gene position: 3109866-3109657 (Counterclockwise)

Preceding gene: 119946184

Following gene: 119946182

Centisome position: 68.2

GC content: 42.38

Gene sequence:

>210_bases
ATGTCTACTAAAGAACAAGGAACCGTTAAGTGGTTCAACGAAGCTAAAGGTTTTGGTTTTATCGAGCAAGCATCTGGTCC
TGATGTATTCGCTCATTTCAGCGCTATTGCAAGCGAAGGTTTCAAAACCTTAGCTGAAGGCCAAAAAGTAGAATTCACTG
TAAGCCAAGGTCAAAAAGGCCCGCAAGCAGACAGTATCGTAGCACTTTAA

Upstream 100 bases:

>100_bases
TATTAATAATACCTCGCTCTGTAGTCTTTAAGTTCCAGTCTGTTTTTACGCTATTCAAGCCTTTTGAAGGCACCCTACAT
TAAAATTACAGGATATTATT

Downstream 100 bases:

>100_bases
TTTGCTGTGATATTTTAGCTCCCATGCGGAGCTGATTAAATATTAAAAAAATGGTAAACCTTTACGGGTTTGCCATTTTT
TTTTGCTTATTTTAAAGGTG

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MSTKEQGTVKWFNEAKGFGFIEQASGPDVFAHFSAIASEGFKTLAEGQKVEFTVSQGQKGPQADSIVAL

Sequences:

>Translated_69_residues
MSTKEQGTVKWFNEAKGFGFIEQASGPDVFAHFSAIASEGFKTLAEGQKVEFTVSQGQKGPQADSIVAL
>Mature_68_residues
STKEQGTVKWFNEAKGFGFIEQASGPDVFAHFSAIASEGFKTLAEGQKVEFTVSQGQKGPQADSIVAL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=68, Percent_Identity=61.7647058823529, Blast_Score=87, Evalue=1e-19,
Organism=Escherichia coli, GI1788126, Length=67, Percent_Identity=64.1791044776119, Blast_Score=84, Evalue=2e-18,
Organism=Escherichia coli, GI2367114, Length=70, Percent_Identity=58.5714285714286, Blast_Score=83, Evalue=4e-18,
Organism=Escherichia coli, GI1789979, Length=70, Percent_Identity=57.1428571428571, Blast_Score=80, Evalue=2e-17,
Organism=Escherichia coli, GI1787834, Length=70, Percent_Identity=60, Blast_Score=80, Evalue=4e-17,
Organism=Escherichia coli, GI1787839, Length=68, Percent_Identity=54.4117647058823, Blast_Score=78, Evalue=1e-16,
Organism=Escherichia coli, GI1787107, Length=66, Percent_Identity=56.0606060606061, Blast_Score=76, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7367; Mature: 7236

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTKEQGTVKWFNEAKGFGFIEQASGPDVFAHFSAIASEGFKTLAEGQKVEFTVSQGQKG
CCCCCCCCEEECCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
PQADSIVAL
CCCCCEECC
>Mature Secondary Structure 
STKEQGTVKWFNEAKGFGFIEQASGPDVFAHFSAIASEGFKTLAEGQKVEFTVSQGQKG
CCCCCCCEEECCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
PQADSIVAL
CCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]