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The map label for this gene is intA [H]

Identifier: 119946113

GI number: 119946113

Start: 3014029

End: 3015273

Strand: Direct

Name: intA [H]

Synonym: Ping_2463

Alternate gene names: 119946113

Gene position: 3014029-3015273 (Clockwise)

Preceding gene: 119946112

Following gene: 119946115

Centisome position: 66.1

GC content: 42.89

Gene sequence:

>1245_bases
ATGGCAATAAAAGTTAAGCCTTTAACGGCTACACAAGTCCTTCAAGCTAAACCAAAAGACAAAGTTTATAACCTGGGAGA
TGGTGATGGCTTATCTTTAAAGATTTTGCCGTTAGGCTCAAAGTTGTGGCGCTTTTCTTATTATCGGCCAGTCAGTAGGA
AAAGAGCGCATTTAGCTTTAGGTATATATCCTTCGGTATCTTTAGCCAAAGCTAGAACCAAAGCGATTGAAGCCAGAAAA
CTGCTTGCTGATGGCATTGATCCTAAAGAACAAAGAGACACCACACTTAAAGCCCAACAAATTGAGCTTTCAAATACACT
CCAAGCTGTATTTGAAGATTGGTTTGCCGTTAAAAAAACCAGCATTAAAGAATTAACAGCAAAAAAGTTAAAACAACGCT
TAGATAAATACCTGTTAACTTATCTTGGCAAATTCCCTATTGCTGAAATCACCGCCCCACAAGCGATCAAAATCCTGCAG
CCAGTTGCTAACCAAGGCAAACTTGAAACTGTTGGCAGGCTTTGCCGTAATCTTAATGAAATAATGACATTTGCAGTTAA
CACCGGAATTATAGAGCACAACAAGCTTGCCGGTATTGGCAAAGCGTTTGCAACCGCTCAAGTCACTAACCAAGCTTCGC
TGAAGCCAGAAGAGCTACCAGAGCTACTCATAGCCCTTAACTACGCCAATATAAAACTTATCACTCGCTGTTTGATTGAA
TGGCAACTGCATACTATGACCCGCCCTGCTGAAACAGCTGGTGCTCGCTGGGGTGAAATTGATAAAGAAAATAAACTTTG
GCACATCCCACCCGAACGCATGAAAAAAGGCAGGCCGCATACAGTCCCCCTAACAACACAAACACTCGCGCTGTTAGAGA
CAATTGATTCAATTACGGGTGACAGTGAATATATCTTCCCGGCAGATAAAACTAATAAAAAACATATTTGCAAGGAGACA
GCGAACAAAGCACTCGCAAGAATGGGCTTTAAAGGTCGCCAGACGTCACACGGATTACGTGCCCTGGCAAGTACCACCCT
GAATGAGCAAAACGTCTTCGATGCAGACGTGATTGAGGCCGCCCTTTCACACGTTGATAAAGATAAAGTGAGAAGTGCTT
ACAACCGCACTGACTACCTTGAGCGCCGCCGCGTACTAATGGGCTGCTGGAGTGATCATATTGAAGAGGCATCGAAAGGA
TCTAACTCAATCACCGGATTAAAAGCGCTAAAGATTGTTAATTAA

Upstream 100 bases:

>100_bases
TTTAGCAGTCCAATAGCGTCTATTAACGTCTTGCAAAATCCACGTTCTGAGGTAAGCTTTAAGGTAATCAATTCAGAACA
GACTTTTAAGTGATTACCTC

Downstream 100 bases:

>100_bases
CCAATACAAAAAATAATGGTAAGTCTTATTAAATGTCGCTAATAGCAACATTAAGTTTATTGAGTGGGTTATGATCTATT
AACCCACTTGATTTTGCATA

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 413

Protein sequence:

>414_residues
MAIKVKPLTATQVLQAKPKDKVYNLGDGDGLSLKILPLGSKLWRFSYYRPVSRKRAHLALGIYPSVSLAKARTKAIEARK
LLADGIDPKEQRDTTLKAQQIELSNTLQAVFEDWFAVKKTSIKELTAKKLKQRLDKYLLTYLGKFPIAEITAPQAIKILQ
PVANQGKLETVGRLCRNLNEIMTFAVNTGIIEHNKLAGIGKAFATAQVTNQASLKPEELPELLIALNYANIKLITRCLIE
WQLHTMTRPAETAGARWGEIDKENKLWHIPPERMKKGRPHTVPLTTQTLALLETIDSITGDSEYIFPADKTNKKHICKET
ANKALARMGFKGRQTSHGLRALASTTLNEQNVFDADVIEAALSHVDKDKVRSAYNRTDYLERRRVLMGCWSDHIEEASKG
SNSITGLKALKIVN

Sequences:

>Translated_414_residues
MAIKVKPLTATQVLQAKPKDKVYNLGDGDGLSLKILPLGSKLWRFSYYRPVSRKRAHLALGIYPSVSLAKARTKAIEARK
LLADGIDPKEQRDTTLKAQQIELSNTLQAVFEDWFAVKKTSIKELTAKKLKQRLDKYLLTYLGKFPIAEITAPQAIKILQ
PVANQGKLETVGRLCRNLNEIMTFAVNTGIIEHNKLAGIGKAFATAQVTNQASLKPEELPELLIALNYANIKLITRCLIE
WQLHTMTRPAETAGARWGEIDKENKLWHIPPERMKKGRPHTVPLTTQTLALLETIDSITGDSEYIFPADKTNKKHICKET
ANKALARMGFKGRQTSHGLRALASTTLNEQNVFDADVIEAALSHVDKDKVRSAYNRTDYLERRRVLMGCWSDHIEEASKG
SNSITGLKALKIVN
>Mature_413_residues
AIKVKPLTATQVLQAKPKDKVYNLGDGDGLSLKILPLGSKLWRFSYYRPVSRKRAHLALGIYPSVSLAKARTKAIEARKL
LADGIDPKEQRDTTLKAQQIELSNTLQAVFEDWFAVKKTSIKELTAKKLKQRLDKYLLTYLGKFPIAEITAPQAIKILQP
VANQGKLETVGRLCRNLNEIMTFAVNTGIIEHNKLAGIGKAFATAQVTNQASLKPEELPELLIALNYANIKLITRCLIEW
QLHTMTRPAETAGARWGEIDKENKLWHIPPERMKKGRPHTVPLTTQTLALLETIDSITGDSEYIFPADKTNKKHICKETA
NKALARMGFKGRQTSHGLRALASTTLNEQNVFDADVIEAALSHVDKDKVRSAYNRTDYLERRRVLMGCWSDHIEEASKGS
NSITGLKALKIVN

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1788974, Length=413, Percent_Identity=46.9733656174334, Blast_Score=377, Evalue=1e-106,
Organism=Escherichia coli, GI145693166, Length=402, Percent_Identity=34.8258706467662, Blast_Score=211, Evalue=7e-56,
Organism=Escherichia coli, GI1788690, Length=390, Percent_Identity=30, Blast_Score=191, Evalue=1e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 46297; Mature: 46166

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIKVKPLTATQVLQAKPKDKVYNLGDGDGLSLKILPLGSKLWRFSYYRPVSRKRAHLAL
CEEEECCCHHHHHHHCCCCCCCEECCCCCCCEEEEEECCHHHHHHHHCCCHHHCCCEEEE
GIYPSVSLAKARTKAIEARKLLADGIDPKEQRDTTLKAQQIELSNTLQAVFEDWFAVKKT
ECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
SIKELTAKKLKQRLDKYLLTYLGKFPIAEITAPQAIKILQPVANQGKLETVGRLCRNLNE
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
IMTFAVNTGIIEHNKLAGIGKAFATAQVTNQASLKPEELPELLIALNYANIKLITRCLIE
HHHHHHHCCCEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH
WQLHTMTRPAETAGARWGEIDKENKLWHIPPERMKKGRPHTVPLTTQTLALLETIDSITG
HHHHHCCCCHHHHCCCCCCCCCCCCEEECCHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC
DSEYIFPADKTNKKHICKETANKALARMGFKGRQTSHGLRALASTTLNEQNVFDADVIEA
CCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHH
ALSHVDKDKVRSAYNRTDYLERRRVLMGCWSDHIEEASKGSNSITGLKALKIVN
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHEEECC
>Mature Secondary Structure 
AIKVKPLTATQVLQAKPKDKVYNLGDGDGLSLKILPLGSKLWRFSYYRPVSRKRAHLAL
EEEECCCHHHHHHHCCCCCCCEECCCCCCCEEEEEECCHHHHHHHHCCCHHHCCCEEEE
GIYPSVSLAKARTKAIEARKLLADGIDPKEQRDTTLKAQQIELSNTLQAVFEDWFAVKKT
ECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
SIKELTAKKLKQRLDKYLLTYLGKFPIAEITAPQAIKILQPVANQGKLETVGRLCRNLNE
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
IMTFAVNTGIIEHNKLAGIGKAFATAQVTNQASLKPEELPELLIALNYANIKLITRCLIE
HHHHHHHCCCEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH
WQLHTMTRPAETAGARWGEIDKENKLWHIPPERMKKGRPHTVPLTTQTLALLETIDSITG
HHHHHCCCCHHHHCCCCCCCCCCCCEEECCHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC
DSEYIFPADKTNKKHICKETANKALARMGFKGRQTSHGLRALASTTLNEQNVFDADVIEA
CCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHH
ALSHVDKDKVRSAYNRTDYLERRRVLMGCWSDHIEEASKGSNSITGLKALKIVN
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7511583; 9278503; 9205837; 7524073 [H]