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The map label for this gene is yckA [H]

Identifier: 119946081

GI number: 119946081

Start: 2978453

End: 2979103

Strand: Reverse

Name: yckA [H]

Synonym: Ping_2430

Alternate gene names: 119946081

Gene position: 2979103-2978453 (Counterclockwise)

Preceding gene: 119946082

Following gene: 119946080

Centisome position: 65.34

GC content: 39.78

Gene sequence:

>651_bases
ATGATGCAATTTACAGACTGGGATATTTTAAGAAATTTATTGTTTGCAGCGCGTTGGACATTGCTGCTTTCTCTCTTTGC
TTTTATTGGCGGAGGCCTGGTAGGGCTGGCTTTGACCTTTATAAGAAGTATTAAAAATCCGTTTCTGACCAAACTGGTGC
AAATTTACGTGGAGTTATTTCAGGGAATTCCATTATTAATGCAACTGTTTTTAACCTTTTTTGGTTTGTCTTTAATTGGC
CTTGATGTTGATGCCTGGTCTGCCGCTATTTTATCACTGACTTTATTCAGCAGCGCTTTTTTGCATGATATTTGGCGTTC
ATGCATTGAAGCCTTACCTAAAGGTCAATGGGAAGCTTGCAGAACATTAGGCCTCACTCATGTGCAAAGTATGCGTCATG
TCATTTTTCCTCAAGCTATAAAAATGGCAATTGCACCCACCGTTGGATTTTCTGTGCAGATTGTTAAAGGCACGGCATTG
GCATCGATTATTGGTTTTGTTGAATTAACCAAAGCGGGCACCATGCTAAATAATGCCACATTTCAACCCTTTAAAGTATT
TGCGCTGGTCGCTTTGCTGTATTTCGTTATCTGTTTCCCTTTGTCTGTTTTAGCCCGCTATCTGGAGAATAAAAATTATG
TACGTCGTTAG

Upstream 100 bases:

>100_bases
CAGCGCTGATTTACCTTTTTTTAGCGATTTTAATGCGTCAACTATTCTCACTGCTGAAAAAATTCATCTTTAAATCATCT
GCTGTATAGGAAACAAAATA

Downstream 100 bases:

>100_bases
TGTTGATAAGATCCATAAATATTATGGTGAGAACCATGTGCTAAAGGGAATTAATTTAAAGGTTAAAGCAGGAGAGGTGA
TTTCCATTATCGGACGCAGT

Product: ABC polar amino acid transporter inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MMQFTDWDILRNLLFAARWTLLLSLFAFIGGGLVGLALTFIRSIKNPFLTKLVQIYVELFQGIPLLMQLFLTFFGLSLIG
LDVDAWSAAILSLTLFSSAFLHDIWRSCIEALPKGQWEACRTLGLTHVQSMRHVIFPQAIKMAIAPTVGFSVQIVKGTAL
ASIIGFVELTKAGTMLNNATFQPFKVFALVALLYFVICFPLSVLARYLENKNYVRR

Sequences:

>Translated_216_residues
MMQFTDWDILRNLLFAARWTLLLSLFAFIGGGLVGLALTFIRSIKNPFLTKLVQIYVELFQGIPLLMQLFLTFFGLSLIG
LDVDAWSAAILSLTLFSSAFLHDIWRSCIEALPKGQWEACRTLGLTHVQSMRHVIFPQAIKMAIAPTVGFSVQIVKGTAL
ASIIGFVELTKAGTMLNNATFQPFKVFALVALLYFVICFPLSVLARYLENKNYVRR
>Mature_216_residues
MMQFTDWDILRNLLFAARWTLLLSLFAFIGGGLVGLALTFIRSIKNPFLTKLVQIYVELFQGIPLLMQLFLTFFGLSLIG
LDVDAWSAAILSLTLFSSAFLHDIWRSCIEALPKGQWEACRTLGLTHVQSMRHVIFPQAIKMAIAPTVGFSVQIVKGTAL
ASIIGFVELTKAGTMLNNATFQPFKVFALVALLYFVICFPLSVLARYLENKNYVRR

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=208, Percent_Identity=34.1346153846154, Blast_Score=121, Evalue=4e-29,
Organism=Escherichia coli, GI1787030, Length=215, Percent_Identity=28.3720930232558, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI87082239, Length=201, Percent_Identity=30.8457711442786, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1787086, Length=214, Percent_Identity=28.5046728971963, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI1786874, Length=191, Percent_Identity=30.8900523560209, Blast_Score=90, Evalue=9e-20,
Organism=Escherichia coli, GI48994930, Length=120, Percent_Identity=38.3333333333333, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1788645, Length=203, Percent_Identity=28.0788177339901, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1788646, Length=168, Percent_Identity=28.5714285714286, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1786873, Length=202, Percent_Identity=25.2475247524752, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24230; Mature: 24230

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMQFTDWDILRNLLFAARWTLLLSLFAFIGGGLVGLALTFIRSIKNPFLTKLVQIYVELF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
QGIPLLMQLFLTFFGLSLIGLDVDAWSAAILSLTLFSSAFLHDIWRSCIEALPKGQWEAC
CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
RTLGLTHVQSMRHVIFPQAIKMAIAPTVGFSVQIVKGTALASIIGFVELTKAGTMLNNAT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCC
FQPFKVFALVALLYFVICFPLSVLARYLENKNYVRR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MMQFTDWDILRNLLFAARWTLLLSLFAFIGGGLVGLALTFIRSIKNPFLTKLVQIYVELF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
QGIPLLMQLFLTFFGLSLIGLDVDAWSAAILSLTLFSSAFLHDIWRSCIEALPKGQWEAC
CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
RTLGLTHVQSMRHVIFPQAIKMAIAPTVGFSVQIVKGTALASIIGFVELTKAGTMLNNAT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCC
FQPFKVFALVALLYFVICFPLSVLARYLENKNYVRR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7704255; 8969502; 9384377 [H]