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The map label for this gene is yfhH [C]

Identifier: 119946079

GI number: 119946079

Start: 2976889

End: 2977707

Strand: Reverse

Name: yfhH [C]

Synonym: Ping_2428

Alternate gene names: 119946079

Gene position: 2977707-2976889 (Counterclockwise)

Preceding gene: 119946080

Following gene: 119946078

Centisome position: 65.31

GC content: 41.88

Gene sequence:

>819_bases
ATGACACCCACGAACAATCCGTTGAGTGAGCGAATTACTAAAAATTATGCTCAATTGACAAAAAATGATCAACGTTTAGC
CGATTATCTGCAGATTAATCCAGAAAAAATATTGATCCTGTCGACCAATGAAATTGCTGAAGCATGCTTGGTATCAAAAA
CCAGTGTCAGTCGTTTTATTCGTAAATTGGGTTATGAAGATCATTTGGCGCTAAGAAATGAACTGCTTGCAGCCAGGGAT
AAAGGAGAGCCTTTATCTGTTACCGCACTTGAGGACTCTGAATTTCGTCAGGAAGTGCACTCATTAGAGCAATTATGGGC
ACAACTGAGCGGAATGAATCTGGAGCAGTTAATTAAAAAAATAGCCACCGCCAAACGCGTTAAGATCATCGGTTATCGTA
ATAGTTATCCGCTGGCACTGCATTTTCGCCAGCAGCTGATGCAATGCCGCTCTGGCGTTGATCTGCTGCCTTTACCCGGG
CAAACGATAGGGGAGGATCTGTCCTCTATCGATGAAGATGACTTTATTATCATTATTGGTATTCGTCGCCGGGTGAGTAA
TTTTGCCAATATTATTAGCCAACTGTCCGGTCATGACTGTTTGCTTATCACCGATCAATCCGGTCAAAAATATGCGCAAA
GTGTGTCGCATTTTTTAGTCTGTTATATGAATAATCAGGCACCTCTTGACAGTTATGCCGTACCGATGAGTTTGATTTCT
CACCTAGTGAATAAAACCTATCGCCTGTTGAGCAGCGAAGCGGTCAAAATAAGCAGAAAAATCAGCATGAATTATTCCAA
GCTCAATGAGCTGGAATGA

Upstream 100 bases:

>100_bases
GCCAAGTGATGAAATCTTTGCCAATCCGCAAACGCCAGAATTGCAAAGCTTTATTTCAGCCGTAAGATAGCATTCTTTAT
TTTAAATTAGGACAAAGGTC

Downstream 100 bases:

>100_bases
TTTTAAATACTATCAATATCAATATCAATATCACTATCACTAGCACTTTCACTTTAATAAGCCTGTAATATTATGAATAT
AATAAAAAAAATAAAAAAAG

Product: DNA-binding helix-turn-helix domain-containing transcriptional regulator protein

Products: NA

Alternate protein names: Transcriptional Regulator RpiR Family; Transcriptional Regulator; RpiR-Family Transcriptional Regulatory Protein; Sugar Isomerase; RpiR Family Transcriptional Regulatory Protein; Helix-Turn-Helix Domain RpiR Family

Number of amino acids: Translated: 272; Mature: 271

Protein sequence:

>272_residues
MTPTNNPLSERITKNYAQLTKNDQRLADYLQINPEKILILSTNEIAEACLVSKTSVSRFIRKLGYEDHLALRNELLAARD
KGEPLSVTALEDSEFRQEVHSLEQLWAQLSGMNLEQLIKKIATAKRVKIIGYRNSYPLALHFRQQLMQCRSGVDLLPLPG
QTIGEDLSSIDEDDFIIIIGIRRRVSNFANIISQLSGHDCLLITDQSGQKYAQSVSHFLVCYMNNQAPLDSYAVPMSLIS
HLVNKTYRLLSSEAVKISRKISMNYSKLNELE

Sequences:

>Translated_272_residues
MTPTNNPLSERITKNYAQLTKNDQRLADYLQINPEKILILSTNEIAEACLVSKTSVSRFIRKLGYEDHLALRNELLAARD
KGEPLSVTALEDSEFRQEVHSLEQLWAQLSGMNLEQLIKKIATAKRVKIIGYRNSYPLALHFRQQLMQCRSGVDLLPLPG
QTIGEDLSSIDEDDFIIIIGIRRRVSNFANIISQLSGHDCLLITDQSGQKYAQSVSHFLVCYMNNQAPLDSYAVPMSLIS
HLVNKTYRLLSSEAVKISRKISMNYSKLNELE
>Mature_271_residues
TPTNNPLSERITKNYAQLTKNDQRLADYLQINPEKILILSTNEIAEACLVSKTSVSRFIRKLGYEDHLALRNELLAARDK
GEPLSVTALEDSEFRQEVHSLEQLWAQLSGMNLEQLIKKIATAKRVKIIGYRNSYPLALHFRQQLMQCRSGVDLLPLPGQ
TIGEDLSSIDEDDFIIIIGIRRRVSNFANIISQLSGHDCLLITDQSGQKYAQSVSHFLVCYMNNQAPLDSYAVPMSLISH
LVNKTYRLLSSEAVKISRKISMNYSKLNELE

Specific function: Unknown

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30826; Mature: 30695

Theoretical pI: Translated: 7.97; Mature: 7.97

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPTNNPLSERITKNYAQLTKNDQRLADYLQINPEKILILSTNEIAEACLVSKTSVSRFI
CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHH
RKLGYEDHLALRNELLAARDKGEPLSVTALEDSEFRQEVHSLEQLWAQLSGMNLEQLIKK
HHCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
IATAKRVKIIGYRNSYPLALHFRQQLMQCRSGVDLLPLPGQTIGEDLSSIDEDDFIIIIG
HHHHHHEEEEEECCCCCCHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHCCCCCEEEEEE
IRRRVSNFANIISQLSGHDCLLITDQSGQKYAQSVSHFLVCYMNNQAPLDSYAVPMSLIS
HHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHH
HLVNKTYRLLSSEAVKISRKISMNYSKLNELE
HHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCC
>Mature Secondary Structure 
TPTNNPLSERITKNYAQLTKNDQRLADYLQINPEKILILSTNEIAEACLVSKTSVSRFI
CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHH
RKLGYEDHLALRNELLAARDKGEPLSVTALEDSEFRQEVHSLEQLWAQLSGMNLEQLIKK
HHCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
IATAKRVKIIGYRNSYPLALHFRQQLMQCRSGVDLLPLPGQTIGEDLSSIDEDDFIIIIG
HHHHHHEEEEEECCCCCCHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHCCCCCEEEEEE
IRRRVSNFANIISQLSGHDCLLITDQSGQKYAQSVSHFLVCYMNNQAPLDSYAVPMSLIS
HHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHH
HLVNKTYRLLSSEAVKISRKISMNYSKLNELE
HHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA