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The map label for this gene is ynbA [H]

Identifier: 119946045

GI number: 119946045

Start: 2908057

End: 2909388

Strand: Direct

Name: ynbA [H]

Synonym: Ping_2390

Alternate gene names: 119946045

Gene position: 2908057-2909388 (Clockwise)

Preceding gene: 119946036

Following gene: 119946047

Centisome position: 63.78

GC content: 45.2

Gene sequence:

>1332_bases
ATGACGATTCCAACAACAGAAAAATCAGTCACCCGCGCCCTATTAATTTCTATTCGCACACCTGATGTCAGCCTGCAGGA
AGTGGAGGAATCATTAGCTGAATTAAGCCGTTTAGTGAGCACCTTAGGTTTTTCTGTGGTAGCGACTAAAACGCAGCGAC
AAAGATCGACCAAACAGCTGTCAGTATTGGGCTCCGGAAAACTGGAAGAATTAGCCGAATTAACCAGTGAGTCTGAAGAT
CAATCGCAGTTAGACTTTAACCCGGATGAATTAAGCGCATTAATAGCCGCAGGCGACATTCAGGAACAGGCAAATGTGGC
GGTCTTTGATTGCGAACTGAGCCCCAATCAAATACGCCATGTTGAAGCGGCATTAGGGGTAGAGGTTTACGATCGTACCC
GCGTGATTATTGAAATCTTTAGTAAACACGCACGGACCCGCACCGCTAAACTACAGGTAGAAATAGCGCGACTTAATTAC
TTAACACCCAGATTACGTGATGAAAACAGTGGCGATCGCGAACGTCAAAAAGGCAGTTGGATAGGTGAAAGTGCCTTTGA
AATTAACAGTCGCCGTATTCGCGATAAAATAGCCGATCTAAAACGTGAGATAAAAAAACTGCAGGAAGAGATGCAGGGCA
GGCGCAGTAGTCGTGTCGAGCAATTGTGTGTGGCGTTAGTGGGTTATACCAATGCCGGAAAATCATCTTTAATGCGCGCC
CTGACGGACTCGGAAGTGTTAGTTGAAGATAAATTATTTGCCACCTTAGATACCACAGTACGTACCCTGCAGCCGCCAAC
ACAGCCGCGAATTTTAATATCAGACACCGTGGGTTTTATCAAAAAGCTGCCCCATGATTTAGTGGCCTCATTTCATTCAA
CTCTGGAAGAAGCAAAAGATGCGGATTTATTGCTTTATGTGGTCGATGCCTCGGATGAAAACTTCACGGCTCAATTAGCC
GTTGTTGATCATGTATTAGCAGAGTTAAATGTCGATGCCAGCAACAGACTATTATTACTGAATAAGGTCGATTGTATCAG
TGAAGAGCGCCAATTAGCGCTGCTAGAGCAATACCCCGATGCGCTGCAAATTAGTGCGCGCAATAAAGGTGATGTCGCCC
TGGTACATCAGGAAATTCAAGATTTTCTGGAAAAGAAAATGTGCCCCGCCTGTTTTCATATTCCCTACACTGCCAGTGGG
GTGATGGGCGAAATTCACAGTAAAATGCAGGTAACAGATGAGCAATATCATGAAGATGGTATGCGTATAACCCTAAAAGC
GACCCCGGTTGCCTTGGAGCGACTGCATAAAATGCTGCAAAGCTCTTTTTAA

Upstream 100 bases:

>100_bases
TAAAATACTGGGCTTTATTAGCCTAGGATAAAATGGGTATATAAGCTCAGCACAAATGCGTAGAATGTACCTTATATTAC
TTTAAGCAATGAGCAGCAAT

Downstream 100 bases:

>100_bases
GACTAAGTTACAGCCTAAACCACCAGCTAAATCAGGTGGTTTAGGCTTTATAAACTCAAGTAAAAAAACGGGTCAAAAGA
CCCGTATTTTTAGCCTGATA

Product: GTP-binding protein, HSR1-related

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 442

Protein sequence:

>443_residues
MTIPTTEKSVTRALLISIRTPDVSLQEVEESLAELSRLVSTLGFSVVATKTQRQRSTKQLSVLGSGKLEELAELTSESED
QSQLDFNPDELSALIAAGDIQEQANVAVFDCELSPNQIRHVEAALGVEVYDRTRVIIEIFSKHARTRTAKLQVEIARLNY
LTPRLRDENSGDRERQKGSWIGESAFEINSRRIRDKIADLKREIKKLQEEMQGRRSSRVEQLCVALVGYTNAGKSSLMRA
LTDSEVLVEDKLFATLDTTVRTLQPPTQPRILISDTVGFIKKLPHDLVASFHSTLEEAKDADLLLYVVDASDENFTAQLA
VVDHVLAELNVDASNRLLLLNKVDCISEERQLALLEQYPDALQISARNKGDVALVHQEIQDFLEKKMCPACFHIPYTASG
VMGEIHSKMQVTDEQYHEDGMRITLKATPVALERLHKMLQSSF

Sequences:

>Translated_443_residues
MTIPTTEKSVTRALLISIRTPDVSLQEVEESLAELSRLVSTLGFSVVATKTQRQRSTKQLSVLGSGKLEELAELTSESED
QSQLDFNPDELSALIAAGDIQEQANVAVFDCELSPNQIRHVEAALGVEVYDRTRVIIEIFSKHARTRTAKLQVEIARLNY
LTPRLRDENSGDRERQKGSWIGESAFEINSRRIRDKIADLKREIKKLQEEMQGRRSSRVEQLCVALVGYTNAGKSSLMRA
LTDSEVLVEDKLFATLDTTVRTLQPPTQPRILISDTVGFIKKLPHDLVASFHSTLEEAKDADLLLYVVDASDENFTAQLA
VVDHVLAELNVDASNRLLLLNKVDCISEERQLALLEQYPDALQISARNKGDVALVHQEIQDFLEKKMCPACFHIPYTASG
VMGEIHSKMQVTDEQYHEDGMRITLKATPVALERLHKMLQSSF
>Mature_442_residues
TIPTTEKSVTRALLISIRTPDVSLQEVEESLAELSRLVSTLGFSVVATKTQRQRSTKQLSVLGSGKLEELAELTSESEDQ
SQLDFNPDELSALIAAGDIQEQANVAVFDCELSPNQIRHVEAALGVEVYDRTRVIIEIFSKHARTRTAKLQVEIARLNYL
TPRLRDENSGDRERQKGSWIGESAFEINSRRIRDKIADLKREIKKLQEEMQGRRSSRVEQLCVALVGYTNAGKSSLMRAL
TDSEVLVEDKLFATLDTTVRTLQPPTQPRILISDTVGFIKKLPHDLVASFHSTLEEAKDADLLLYVVDASDENFTAQLAV
VDHVLAELNVDASNRLLLLNKVDCISEERQLALLEQYPDALQISARNKGDVALVHQEIQDFLEKKMCPACFHIPYTASGV
MGEIHSKMQVTDEQYHEDGMRITLKATPVALERLHKMLQSSF

Specific function: Unknown

COG id: COG2262

COG function: function code R; GTPases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI310133118, Length=171, Percent_Identity=35.672514619883, Blast_Score=102, Evalue=1e-21,
Organism=Homo sapiens, GI310133116, Length=171, Percent_Identity=35.672514619883, Blast_Score=101, Evalue=2e-21,
Organism=Homo sapiens, GI310124269, Length=171, Percent_Identity=35.672514619883, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI310124267, Length=171, Percent_Identity=35.672514619883, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI310124171, Length=171, Percent_Identity=35.672514619883, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI310124169, Length=171, Percent_Identity=35.672514619883, Blast_Score=100, Evalue=2e-21,
Organism=Escherichia coli, GI1790615, Length=399, Percent_Identity=32.8320802005013, Blast_Score=191, Evalue=1e-49,
Organism=Caenorhabditis elegans, GI17561038, Length=241, Percent_Identity=31.1203319502075, Blast_Score=114, Evalue=1e-25,
Organism=Drosophila melanogaster, GI24650079, Length=335, Percent_Identity=32.5373134328358, Blast_Score=116, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016496
- InterPro:   IPR006073
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 49653; Mature: 49522

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIPTTEKSVTRALLISIRTPDVSLQEVEESLAELSRLVSTLGFSVVATKTQRQRSTKQL
CCCCCCHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHEEECHHHHHHHHHH
SVLGSGKLEELAELTSESEDQSQLDFNPDELSALIAAGDIQEQANVAVFDCELSPNQIRH
HECCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCHHCCCEEEEEECCCHHHHHH
VEAALGVEVYDRTRVIIEIFSKHARTRTAKLQVEIARLNYLTPRLRDENSGDRERQKGSW
HHHHHCHHHHHHHHHHHHHHHHHHHCEEHEEEEEEEHHHHCCCCCCCCCCCCHHHHCCCC
IGESAFEINSRRIRDKIADLKREIKKLQEEMQGRRSSRVEQLCVALVGYTNAGKSSLMRA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
LTDSEVLVEDKLFATLDTTVRTLQPPTQPRILISDTVGFIKKLPHDLVASFHSTLEEAKD
HCCCCCEEHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHCCHHHHHHHHHHHHHCCC
ADLLLYVVDASDENFTAQLAVVDHVLAELNVDASNRLLLLNKVDCISEERQLALLEQYPD
CCEEEEEEECCCCCCEEHHHHHHHHHHHCCCCCCCCEEEEECCHHHCHHHHHHHHHHCCC
ALQISARNKGDVALVHQEIQDFLEKKMCPACFHIPYTASGVMGEIHSKMQVTDEQYHEDG
CEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCHHHHCCCC
MRITLKATPVALERLHKMLQSSF
CEEEEEECHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TIPTTEKSVTRALLISIRTPDVSLQEVEESLAELSRLVSTLGFSVVATKTQRQRSTKQL
CCCCCHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHEEECHHHHHHHHHH
SVLGSGKLEELAELTSESEDQSQLDFNPDELSALIAAGDIQEQANVAVFDCELSPNQIRH
HECCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCHHCCCEEEEEECCCHHHHHH
VEAALGVEVYDRTRVIIEIFSKHARTRTAKLQVEIARLNYLTPRLRDENSGDRERQKGSW
HHHHHCHHHHHHHHHHHHHHHHHHHCEEHEEEEEEEHHHHCCCCCCCCCCCCHHHHCCCC
IGESAFEINSRRIRDKIADLKREIKKLQEEMQGRRSSRVEQLCVALVGYTNAGKSSLMRA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
LTDSEVLVEDKLFATLDTTVRTLQPPTQPRILISDTVGFIKKLPHDLVASFHSTLEEAKD
HCCCCCEEHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHCCHHHHHHHHHHHHHCCC
ADLLLYVVDASDENFTAQLAVVDHVLAELNVDASNRLLLLNKVDCISEERQLALLEQYPD
CCEEEEEEECCCCCCEEHHHHHHHHHHHCCCCCCCCEEEEECCHHHCHHHHHHHHHHCCC
ALQISARNKGDVALVHQEIQDFLEKKMCPACFHIPYTASGVMGEIHSKMQVTDEQYHEDG
CEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCHHHHCCCC
MRITLKATPVALERLHKMLQSSF
CEEEEEECHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]