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The map label for this gene is ygiQ [H]

Identifier: 119945931

GI number: 119945931

Start: 2758681

End: 2760993

Strand: Direct

Name: ygiQ [H]

Synonym: Ping_2271

Alternate gene names: 119945931

Gene position: 2758681-2760993 (Clockwise)

Preceding gene: 119945930

Following gene: 119945939

Centisome position: 60.5

GC content: 43.71

Gene sequence:

>2313_bases
ATGAGCGTTGATCTATTACAAGCCGAAAGACCCCTTTTCTCATACCCGTCATTTAAATCCAGAAACGAAAAAGCAGCGCC
ATTCCTACCAATGTCACGCCAAGAGATGAAAAAACTCGGCTGGGATAGTTGCGATATTATTCTCGTTGTGGGTGATGCTT
ATGTTGACCACCCCAGTTTTGGCATGGCGGTGATCGGTCGAACACTTGAAGCTCAAGGTTACCGCGTGGGTATTATTGCT
CAGCCAGATTGGCAGAGTAAAGAAGCCTTTATGACATTAGGTAAACCTAACCTGTTTTTTGGTGTTTCAGCCGGTAATAT
GGACTCGATGATCAACCGTTATACAGCGGAACGCCGAATGCGTCACGATGATGCCTACACGGCTAACAACGAAGGTGGTA
AACGTCCAGATCGTGCGGTATTAGTGTATACACAACGCTGTAAAGAAGCTTACAAATCGGTGCCCGTTGTTATTGGCGGA
ATTGAAGCCAGTTTACGCCGTATTGCCCATTATGATTACTGGTCCGATAAAGTGCGTCGCTCAGTTATTCTCGATGCGAA
GGCCGATATTTTATTATACGGCAATGCGGAGCGGCCTCTTCTAGAAGTTGCCCACCGTTTATCACAGGGTGAGCCGATAA
GCTCGATGACCGAGATTCGCGGTACCGCTATTTTGACTAAAGCCGCGTTACCAGGATGGGATGGTGTTGATTCACGCAAG
GTGGATCAACTGGGTAAAATAGATCCTATTATCAATCCCTATGCCGATATTAATGTTGCCTGCGCCACACAAAAACTGGC
GGACGAAAGCTTAAACGATCCAACCCAGGTTATTACTATCCAACCGGCAGAATTTAAACCAAGCAAGAAAAAACCTTGGG
AAAAAACCTATATCCAACTGCCAAGCTACGAGAAAGTCTGTCAAGATAAAGTGCACTATGCTCATGCTTCTCGTATTATG
CATCAGGAAACCAATCCCGGTTGCGCTCGCGCCTTAGCACAGTTCCACGGTGAACGTTTAGTGTGGCTCAACCCACCTGC
CTATCCGCTCACAACTGAAGAGATAGACAGTGTTTTTGGACTGCCTTATCAGCGTATACCACATCCGTCCTACGGTGATG
CAAAAATACCGGCTTACGATATGATCCGTTTCTCAATCAATATTATGCGCGGTTGTTTTGGCGGTTGTACTTTCTGCTCA
ATTACAGAGCATGAAGGACGGGTAATACAAAGTCGTTCTGAAGATTCTATCATTAAAGAAATTGAAATTATTCGCGATAC
CGTCCCCGGATTTACCGGTGTTATTTCTGATTTGGGTGGCCCGACGGCAAACATGTATCGCCTGAAATGTAAAAGTCCTA
AAGCCGAACAAACCTGTCGCCGTTTGAGCTGTGTTTACCCCGATATTTGTCATCATCTCAATACTGACCATGAGCATACA
ATTAATCTTTATCGTCGCGCGCGTAAACTCACGGGTATTAAGAAAATATTGATAGCCTCCGGTGTACGTTATGATATCGC
CGTTGAAGATCCGCGTTATGTGAAAGAGTTAGTTGAACATCATGTTGGCGGTTATCTGAAAATTGCACCTGAGCATACAG
AAAAAGGCCCATTAGACAAAATGATGAAGCCGACCATGAGCAGTTATGAAGCATTTAAACAAATGTTTGAAAAATACTCT
AAAGCGGCGGGCAAAAAACAATACCTTATTCCCTATTTTATTTCGGCGCACCCGGGTACTACGGATCAAGATATGATTAA
TCTTGCATTATGGTTAAAAAGTAATAATTTTAAACTCGATCAGGTACAAAACTTTTACCCTTCGCCTCTGGCGAATGCAA
CCACTATGTACCATACCGAGAAAAATCCGTTACATAAAGTATCCAAAGACAGTGAAGAGGTGATAAGCCCTAAGGGTGGC
CGACAACGTAAACTTCATAAAGCGATATTACGTTATCATGTGCCGGAAAACTGGCCATTAATTCGTGAAACCCTTAAGAA
ATTAGGATTAGCGAGAAAATTGATTGGTAAAAGTCCTCAGCACCTGGTGCCACCGGAATCACGTAATGAGCTACAGGGTA
TTGCTCAGCAGGGTAAATTTGTAAGCAAGAATAAACCGGTACAAAGTGCTGTCACCCGCTTTACCGGCTCCGCACAATTT
AAGAAAGCGGCACCCAATACAAAACAGGAAAAATCAGCCGCTGGCAAAAAAATAGGCAGCAATAAACCAGTACCACTTGA
AAAAGCAGAAAATAAGATTGCGAGTAAGCCCAAAAATAAGCAGTTTAATTTTGCAGGGCAAAAGAAAAAGTGA

Upstream 100 bases:

>100_bases
CAATCACTTAAAAACCATAAAAACATCATGGTTAAGAAAGCATCGCAGAGTTTAATTTCTTCTGTATAATCAGCGCTCAT
TTTCCAGTTAGGCAAAAATA

Downstream 100 bases:

>100_bases
TTATAAAAGCTTGACGAGCTAATTATTTAAGGGCGGTTATCCGCCCTTTTTACTGCCTAGATTAAACAATGGATAGGTTA
AAAAACAGATCGTCCAGAAA

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 770; Mature: 769

Protein sequence:

>770_residues
MSVDLLQAERPLFSYPSFKSRNEKAAPFLPMSRQEMKKLGWDSCDIILVVGDAYVDHPSFGMAVIGRTLEAQGYRVGIIA
QPDWQSKEAFMTLGKPNLFFGVSAGNMDSMINRYTAERRMRHDDAYTANNEGGKRPDRAVLVYTQRCKEAYKSVPVVIGG
IEASLRRIAHYDYWSDKVRRSVILDAKADILLYGNAERPLLEVAHRLSQGEPISSMTEIRGTAILTKAALPGWDGVDSRK
VDQLGKIDPIINPYADINVACATQKLADESLNDPTQVITIQPAEFKPSKKKPWEKTYIQLPSYEKVCQDKVHYAHASRIM
HQETNPGCARALAQFHGERLVWLNPPAYPLTTEEIDSVFGLPYQRIPHPSYGDAKIPAYDMIRFSINIMRGCFGGCTFCS
ITEHEGRVIQSRSEDSIIKEIEIIRDTVPGFTGVISDLGGPTANMYRLKCKSPKAEQTCRRLSCVYPDICHHLNTDHEHT
INLYRRARKLTGIKKILIASGVRYDIAVEDPRYVKELVEHHVGGYLKIAPEHTEKGPLDKMMKPTMSSYEAFKQMFEKYS
KAAGKKQYLIPYFISAHPGTTDQDMINLALWLKSNNFKLDQVQNFYPSPLANATTMYHTEKNPLHKVSKDSEEVISPKGG
RQRKLHKAILRYHVPENWPLIRETLKKLGLARKLIGKSPQHLVPPESRNELQGIAQQGKFVSKNKPVQSAVTRFTGSAQF
KKAAPNTKQEKSAAGKKIGSNKPVPLEKAENKIASKPKNKQFNFAGQKKK

Sequences:

>Translated_770_residues
MSVDLLQAERPLFSYPSFKSRNEKAAPFLPMSRQEMKKLGWDSCDIILVVGDAYVDHPSFGMAVIGRTLEAQGYRVGIIA
QPDWQSKEAFMTLGKPNLFFGVSAGNMDSMINRYTAERRMRHDDAYTANNEGGKRPDRAVLVYTQRCKEAYKSVPVVIGG
IEASLRRIAHYDYWSDKVRRSVILDAKADILLYGNAERPLLEVAHRLSQGEPISSMTEIRGTAILTKAALPGWDGVDSRK
VDQLGKIDPIINPYADINVACATQKLADESLNDPTQVITIQPAEFKPSKKKPWEKTYIQLPSYEKVCQDKVHYAHASRIM
HQETNPGCARALAQFHGERLVWLNPPAYPLTTEEIDSVFGLPYQRIPHPSYGDAKIPAYDMIRFSINIMRGCFGGCTFCS
ITEHEGRVIQSRSEDSIIKEIEIIRDTVPGFTGVISDLGGPTANMYRLKCKSPKAEQTCRRLSCVYPDICHHLNTDHEHT
INLYRRARKLTGIKKILIASGVRYDIAVEDPRYVKELVEHHVGGYLKIAPEHTEKGPLDKMMKPTMSSYEAFKQMFEKYS
KAAGKKQYLIPYFISAHPGTTDQDMINLALWLKSNNFKLDQVQNFYPSPLANATTMYHTEKNPLHKVSKDSEEVISPKGG
RQRKLHKAILRYHVPENWPLIRETLKKLGLARKLIGKSPQHLVPPESRNELQGIAQQGKFVSKNKPVQSAVTRFTGSAQF
KKAAPNTKQEKSAAGKKIGSNKPVPLEKAENKIASKPKNKQFNFAGQKKK
>Mature_769_residues
SVDLLQAERPLFSYPSFKSRNEKAAPFLPMSRQEMKKLGWDSCDIILVVGDAYVDHPSFGMAVIGRTLEAQGYRVGIIAQ
PDWQSKEAFMTLGKPNLFFGVSAGNMDSMINRYTAERRMRHDDAYTANNEGGKRPDRAVLVYTQRCKEAYKSVPVVIGGI
EASLRRIAHYDYWSDKVRRSVILDAKADILLYGNAERPLLEVAHRLSQGEPISSMTEIRGTAILTKAALPGWDGVDSRKV
DQLGKIDPIINPYADINVACATQKLADESLNDPTQVITIQPAEFKPSKKKPWEKTYIQLPSYEKVCQDKVHYAHASRIMH
QETNPGCARALAQFHGERLVWLNPPAYPLTTEEIDSVFGLPYQRIPHPSYGDAKIPAYDMIRFSINIMRGCFGGCTFCSI
TEHEGRVIQSRSEDSIIKEIEIIRDTVPGFTGVISDLGGPTANMYRLKCKSPKAEQTCRRLSCVYPDICHHLNTDHEHTI
NLYRRARKLTGIKKILIASGVRYDIAVEDPRYVKELVEHHVGGYLKIAPEHTEKGPLDKMMKPTMSSYEAFKQMFEKYSK
AAGKKQYLIPYFISAHPGTTDQDMINLALWLKSNNFKLDQVQNFYPSPLANATTMYHTEKNPLHKVSKDSEEVISPKGGR
QRKLHKAILRYHVPENWPLIRETLKKLGLARKLIGKSPQHLVPPESRNELQGIAQQGKFVSKNKPVQSAVTRFTGSAQFK
KAAPNTKQEKSAAGKKIGSNKPVPLEKAENKIASKPKNKQFNFAGQKKK

Specific function: Unknown

COG id: COG1032

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0313 family [H]

Homologues:

Organism=Escherichia coli, GI48994917, Length=751, Percent_Identity=67.5099866844208, Blast_Score=1070, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR020612
- InterPro:   IPR007197
- InterPro:   IPR013704
- InterPro:   IPR022946 [H]

Pfam domain/function: PF04055 Radical_SAM; PF08497 Radical_SAM_N [H]

EC number: NA

Molecular weight: Translated: 86754; Mature: 86623

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS01278 UPF0004

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVDLLQAERPLFSYPSFKSRNEKAAPFLPMSRQEMKKLGWDSCDIILVVGDAYVDHPSF
CCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEECCCEECCCCC
GMAVIGRTLEAQGYRVGIIAQPDWQSKEAFMTLGKPNLFFGVSAGNMDSMINRYTAERRM
CHHHHCCHHCCCCEEEEEEECCCCCCCHHHEECCCCCEEEEECCCCHHHHHHHHHHHHHH
RHDDAYTANNEGGKRPDRAVLVYTQRCKEAYKSVPVVIGGIEASLRRIAHYDYWSDKVRR
HCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHCCCCEEEECHHHHHHHHHHCCHHHHHHHH
SVILDAKADILLYGNAERPLLEVAHRLSQGEPISSMTEIRGTAILTKAALPGWDGVDSRK
HHEEECCCCEEEECCCCCHHHHHHHHHCCCCCHHHHHHHCCHHEEEHHCCCCCCCCCCHH
VDQLGKIDPIINPYADINVACATQKLADESLNDPTQVITIQPAEFKPSKKKPWEKTYIQL
HHHHCCCCCCCCCCCCCEEEEHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHEEEC
PSYEKVCQDKVHYAHASRIMHQETNPGCARALAQFHGERLVWLNPPAYPLTTEEIDSVFG
CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHC
LPYQRIPHPSYGDAKIPAYDMIRFSINIMRGCFGGCTFCSITEHEGRVIQSRSEDSIIKE
CCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHHH
IEIIRDTVPGFTGVISDLGGPTANMYRLKCKSPKAEQTCRRLSCVYPDICHHLNTDHEHT
HHHHHHHCCCHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCHHHHHHCCCCHHHH
INLYRRARKLTGIKKILIASGVRYDIAVEDPRYVKELVEHHVGGYLKIAPEHTEKGPLDK
HHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCEEEECCCCCCCCCHHH
MMKPTMSSYEAFKQMFEKYSKAAGKKQYLIPYFISAHPGTTDQDMINLALWLKSNNFKLD
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHEEEEEEEECCCCCHH
QVQNFYPSPLANATTMYHTEKNPLHKVSKDSEEVISPKGGRQRKLHKAILRYHVPENWPL
HHHCCCCCCCCCCEEEEECCCCHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHCCCCCCHH
IRETLKKLGLARKLIGKSPQHLVPPESRNELQGIAQQGKFVSKNKPVQSAVTRFTGSAQF
HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCHH
KKAAPNTKQEKSAAGKKIGSNKPVPLEKAENKIASKPKNKQFNFAGQKKK
HHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SVDLLQAERPLFSYPSFKSRNEKAAPFLPMSRQEMKKLGWDSCDIILVVGDAYVDHPSF
CCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEECCCEECCCCC
GMAVIGRTLEAQGYRVGIIAQPDWQSKEAFMTLGKPNLFFGVSAGNMDSMINRYTAERRM
CHHHHCCHHCCCCEEEEEEECCCCCCCHHHEECCCCCEEEEECCCCHHHHHHHHHHHHHH
RHDDAYTANNEGGKRPDRAVLVYTQRCKEAYKSVPVVIGGIEASLRRIAHYDYWSDKVRR
HCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHCCCCEEEECHHHHHHHHHHCCHHHHHHHH
SVILDAKADILLYGNAERPLLEVAHRLSQGEPISSMTEIRGTAILTKAALPGWDGVDSRK
HHEEECCCCEEEECCCCCHHHHHHHHHCCCCCHHHHHHHCCHHEEEHHCCCCCCCCCCHH
VDQLGKIDPIINPYADINVACATQKLADESLNDPTQVITIQPAEFKPSKKKPWEKTYIQL
HHHHCCCCCCCCCCCCCEEEEHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHEEEC
PSYEKVCQDKVHYAHASRIMHQETNPGCARALAQFHGERLVWLNPPAYPLTTEEIDSVFG
CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHC
LPYQRIPHPSYGDAKIPAYDMIRFSINIMRGCFGGCTFCSITEHEGRVIQSRSEDSIIKE
CCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHHH
IEIIRDTVPGFTGVISDLGGPTANMYRLKCKSPKAEQTCRRLSCVYPDICHHLNTDHEHT
HHHHHHHCCCHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCHHHHHHCCCCHHHH
INLYRRARKLTGIKKILIASGVRYDIAVEDPRYVKELVEHHVGGYLKIAPEHTEKGPLDK
HHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCEEEECCCCCCCCCHHH
MMKPTMSSYEAFKQMFEKYSKAAGKKQYLIPYFISAHPGTTDQDMINLALWLKSNNFKLD
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHEEEEEEEECCCCCHH
QVQNFYPSPLANATTMYHTEKNPLHKVSKDSEEVISPKGGRQRKLHKAILRYHVPENWPL
HHHCCCCCCCCCCEEEEECCCCHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHCCCCCCHH
IRETLKKLGLARKLIGKSPQHLVPPESRNELQGIAQQGKFVSKNKPVQSAVTRFTGSAQF
HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCHH
KKAAPNTKQEKSAAGKKIGSNKPVPLEKAENKIASKPKNKQFNFAGQKKK
HHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]