Click here to switch to the map view.

The map label for this gene is yddU [C]

Identifier: 119945801

GI number: 119945801

Start: 2605833

End: 2606576

Strand: Reverse

Name: yddU [C]

Synonym: Ping_2138

Alternate gene names: 119945801

Gene position: 2606576-2605833 (Counterclockwise)

Preceding gene: 119945802

Following gene: 119945800

Centisome position: 57.17

GC content: 47.58

Gene sequence:

>744_bases
ATGATCGGTGTGCGCGCGAAACAATTTGAGCCATTTTTTCAGCCAAAAGTAGATTTTAAAACGGGTCGTATTATCGGTGC
TGAGGCGCTGGCGCGGTGGCTACATTCAGAGCACGGGGTGATCACGCCTTATGCATTTATCCATTTGCTTGAACAGAGCA
GCGAGATAGACGAACTGACATTTCTGATGCTGGAGAAAGCGACGGTTGCGTGCCATTTATTACAGGATCAGGGTTATGGG
ATGACAATTTCGGTCAATCTATCATTGACCTCACTCAGCGATATTACGCTGGCAAAAAGAATTACTCAGGTGGTGCGGGA
TGCCGGCGTTGATCCGACTAAAATCATTCTTGAAATCACCGAGTCAGCAGCGATGACCGAGGTTGCCCCTGCCTTGGAAA
ATTTGGCAAGATTGCGCATGCACGGTTTCGGTCTTTCTATCGACGACTACGGCACGGGCTACGCCAGCATGCAGCAGCTC
ACGCGGATTGCCTTCAATGAACTAAAAATAGACCAGTCTTTTGTGAAGGACGTCGCCACTAATCAGTCGCTACGAATCAT
CGTTGAGTCGAGCATCAACATGGCGCGAAAGCTACTTGTTAATAGCACTGCCGAGGGTGTGGAGACACAGGAGGATTGGG
ATACAATGAAGAGCATTGGGTGTGATACAGCGCAGGGTTATTTTATCGCTAAGCCAATGAATTTAAATGCATTTATTGAA
TTTTGTGCGGAATATTCAGCCTGA

Upstream 100 bases:

>100_bases
AATTACTGATTTCTAAATCTATGTTGTCTACGGAAGTTAAATTGCAGCAAGCAGTGACCGATACTAACATGGTGCACCTG
TTTTCAGTCTTGATGAAATA

Downstream 100 bases:

>100_bases
AAAAGTGGTTTTGAACATGACAAAAAAGCGAGCAATCAGAGTTCTTTTTTGTATTTACCTGTGAGATAGTAATCTGTTCC
ATTAAATTCGACTCAGTTAT

Product: cyclic-di-GMP regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MIGVRAKQFEPFFQPKVDFKTGRIIGAEALARWLHSEHGVITPYAFIHLLEQSSEIDELTFLMLEKATVACHLLQDQGYG
MTISVNLSLTSLSDITLAKRITQVVRDAGVDPTKIILEITESAAMTEVAPALENLARLRMHGFGLSIDDYGTGYASMQQL
TRIAFNELKIDQSFVKDVATNQSLRIIVESSINMARKLLVNSTAEGVETQEDWDTMKSIGCDTAQGYFIAKPMNLNAFIE
FCAEYSA

Sequences:

>Translated_247_residues
MIGVRAKQFEPFFQPKVDFKTGRIIGAEALARWLHSEHGVITPYAFIHLLEQSSEIDELTFLMLEKATVACHLLQDQGYG
MTISVNLSLTSLSDITLAKRITQVVRDAGVDPTKIILEITESAAMTEVAPALENLARLRMHGFGLSIDDYGTGYASMQQL
TRIAFNELKIDQSFVKDVATNQSLRIIVESSINMARKLLVNSTAEGVETQEDWDTMKSIGCDTAQGYFIAKPMNLNAFIE
FCAEYSA
>Mature_247_residues
MIGVRAKQFEPFFQPKVDFKTGRIIGAEALARWLHSEHGVITPYAFIHLLEQSSEIDELTFLMLEKATVACHLLQDQGYG
MTISVNLSLTSLSDITLAKRITQVVRDAGVDPTKIILEITESAAMTEVAPALENLARLRMHGFGLSIDDYGTGYASMQQL
TRIAFNELKIDQSFVKDVATNQSLRIIVESSINMARKLLVNSTAEGVETQEDWDTMKSIGCDTAQGYFIAKPMNLNAFIE
FCAEYSA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=232, Percent_Identity=31.4655172413793, Blast_Score=135, Evalue=2e-33,
Organism=Escherichia coli, GI1790496, Length=242, Percent_Identity=32.2314049586777, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1786507, Length=242, Percent_Identity=33.4710743801653, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1787541, Length=233, Percent_Identity=30.4721030042918, Blast_Score=119, Evalue=1e-28,
Organism=Escherichia coli, GI1787055, Length=231, Percent_Identity=31.1688311688312, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1788502, Length=242, Percent_Identity=30.5785123966942, Blast_Score=117, Evalue=6e-28,
Organism=Escherichia coli, GI87081845, Length=224, Percent_Identity=32.1428571428571, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI87082096, Length=213, Percent_Identity=34.7417840375587, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI87081743, Length=241, Percent_Identity=31.9502074688797, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI226510982, Length=239, Percent_Identity=29.7071129707113, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI87081980, Length=244, Percent_Identity=30.327868852459, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1788849, Length=207, Percent_Identity=33.8164251207729, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI1787410, Length=220, Percent_Identity=26.8181818181818, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 27422; Mature: 27422

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGVRAKQFEPFFQPKVDFKTGRIIGAEALARWLHSEHGVITPYAFIHLLEQSSEIDELT
CCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHH
FLMLEKATVACHLLQDQGYGMTISVNLSLTSLSDITLAKRITQVVRDAGVDPTKIILEIT
HHHHHHHHHHHHEEECCCCCEEEEEEEEEECHHHHHHHHHHHHHHHHCCCCHHHHHEEHH
ESAAMTEVAPALENLARLRMHGFGLSIDDYGTGYASMQQLTRIAFNELKIDQSFVKDVAT
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHC
NQSLRIIVESSINMARKLLVNSTAEGVETQEDWDTMKSIGCDTAQGYFIAKPMNLNAFIE
CCCEEEEEEHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCHHHHHH
FCAEYSA
HHHHHCC
>Mature Secondary Structure
MIGVRAKQFEPFFQPKVDFKTGRIIGAEALARWLHSEHGVITPYAFIHLLEQSSEIDELT
CCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHH
FLMLEKATVACHLLQDQGYGMTISVNLSLTSLSDITLAKRITQVVRDAGVDPTKIILEIT
HHHHHHHHHHHHEEECCCCCEEEEEEEEEECHHHHHHHHHHHHHHHHCCCCHHHHHEEHH
ESAAMTEVAPALENLARLRMHGFGLSIDDYGTGYASMQQLTRIAFNELKIDQSFVKDVAT
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHC
NQSLRIIVESSINMARKLLVNSTAEGVETQEDWDTMKSIGCDTAQGYFIAKPMNLNAFIE
CCCEEEEEEHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCHHHHHH
FCAEYSA
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]