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The map label for this gene is ybhD [H]

Identifier: 119945794

GI number: 119945794

Start: 2595956

End: 2596846

Strand: Direct

Name: ybhD [H]

Synonym: Ping_2130

Alternate gene names: 119945794

Gene position: 2595956-2596846 (Clockwise)

Preceding gene: 119945785

Following gene: 119945795

Centisome position: 56.93

GC content: 45.34

Gene sequence:

>891_bases
ATGAATATCAAACACCAACAATTAAATCATTTTGTGATGGTCGTCGAAGAAGGTGGATTTCGAGCCGCCTCAAATCGTGC
AAACCGTTCTCAAGCAGCACTTTCTACGTCAATAAAAGAACTGGAAAAAATTCTCGGTCAGCCCCTTTTCGAAGCTGGAA
ATAAATTGACACTCACTCCATTCGGCAATATATGTCTACCAAAAATAAGGCTGTTCCTGAATGCTTACGGCTCATTGGTC
AATGATTTACGCGCGGCGGCAGCTGGCCAACAGGGGCGAGTACGAATCGCCAGTGTCCCTTCCGTGGCAGCCAAACTTAT
TCCAAGTGTGCTAGCCGAATTTTGTGAAAAGTATCCTAAGGTAGAAGTGAGCTTAATTGACGATAATGCCGCGGGGGTCG
AAGCGCGACTGCTGGCAGGAGAAGTGGATTTAGCACTAGGAAACAGCTCTAATATTGCAGACGATGCGCTAGATTTCACG
CCACTGATAACAGATCCAATTGGGGTGGTGTGTTTACGAGATAACCCAATCGCAGCACATCCACAGGGAGTAAAATGGCA
AGAATTATTAAAACAACCCTTTATTAGAAACGGCACATGCACGTTATTAGATCCAACACCCGCACGCGCCCTTAGCCAGC
AAGCGCTTTATTCAATAGAGAATATCACTTCGCTTTTTTCGGTACTAGAGTTGGGGATCGGCATCACAACACTGCCCAAA
CTCGCTTTCCCGATCAACCAAACACGGTTGATTTGGATCCCCTTGACCGACCCGCCACTCAAACGCCAAATTGGTATTTT
CAAATTGGCAGATCGAACCATCTCTCCTCAAGCACAGATTTTTCTTGATTTGTGTATTAAATACCTGAACGCCACTGGAA
AATCTGATTAA

Upstream 100 bases:

>100_bases
GACTGGTGATAAGCAAAACGGTAAAATTCTGTCATTTGATAATAAAAATCTATCACCCTGCTGAGGCAAGGTAAATAAAG
GGCTTACAGGAGCTGTACTC

Downstream 100 bases:

>100_bases
CGTTTGTTTTTCAGTGAAGCGAGCCTAGTGTGAAAGGTGGGCGATCCATTGCTTTTTATTTACGCAGTTGAATTGATAAT
ACGCATTGAGATAAATAAAT

Product: transcriptional regulator, substrate-binding of LysR family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MNIKHQQLNHFVMVVEEGGFRAASNRANRSQAALSTSIKELEKILGQPLFEAGNKLTLTPFGNICLPKIRLFLNAYGSLV
NDLRAAAAGQQGRVRIASVPSVAAKLIPSVLAEFCEKYPKVEVSLIDDNAAGVEARLLAGEVDLALGNSSNIADDALDFT
PLITDPIGVVCLRDNPIAAHPQGVKWQELLKQPFIRNGTCTLLDPTPARALSQQALYSIENITSLFSVLELGIGITTLPK
LAFPINQTRLIWIPLTDPPLKRQIGIFKLADRTISPQAQIFLDLCIKYLNATGKSD

Sequences:

>Translated_296_residues
MNIKHQQLNHFVMVVEEGGFRAASNRANRSQAALSTSIKELEKILGQPLFEAGNKLTLTPFGNICLPKIRLFLNAYGSLV
NDLRAAAAGQQGRVRIASVPSVAAKLIPSVLAEFCEKYPKVEVSLIDDNAAGVEARLLAGEVDLALGNSSNIADDALDFT
PLITDPIGVVCLRDNPIAAHPQGVKWQELLKQPFIRNGTCTLLDPTPARALSQQALYSIENITSLFSVLELGIGITTLPK
LAFPINQTRLIWIPLTDPPLKRQIGIFKLADRTISPQAQIFLDLCIKYLNATGKSD
>Mature_296_residues
MNIKHQQLNHFVMVVEEGGFRAASNRANRSQAALSTSIKELEKILGQPLFEAGNKLTLTPFGNICLPKIRLFLNAYGSLV
NDLRAAAAGQQGRVRIASVPSVAAKLIPSVLAEFCEKYPKVEVSLIDDNAAGVEARLLAGEVDLALGNSSNIADDALDFT
PLITDPIGVVCLRDNPIAAHPQGVKWQELLKQPFIRNGTCTLLDPTPARALSQQALYSIENITSLFSVLELGIGITTLPK
LAFPINQTRLIWIPLTDPPLKRQIGIFKLADRTISPQAQIFLDLCIKYLNATGKSD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=293, Percent_Identity=30.3754266211604, Blast_Score=144, Evalue=5e-36,
Organism=Escherichia coli, GI1788748, Length=299, Percent_Identity=28.7625418060201, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI157672245, Length=297, Percent_Identity=24.2424242424242, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787879, Length=312, Percent_Identity=26.2820512820513, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1787601, Length=178, Percent_Identity=28.6516853932584, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790399, Length=278, Percent_Identity=26.2589928057554, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788887, Length=265, Percent_Identity=25.6603773584906, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787806, Length=168, Percent_Identity=31.547619047619, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI87081904, Length=195, Percent_Identity=25.6410256410256, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790208, Length=300, Percent_Identity=23.6666666666667, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32160; Mature: 32160

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIKHQQLNHFVMVVEEGGFRAASNRANRSQAALSTSIKELEKILGQPLFEAGNKLTLTP
CCCCHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCEEEECC
FGNICLPKIRLFLNAYGSLVNDLRAAAAGQQGRVRIASVPSVAAKLIPSVLAEFCEKYPK
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCC
VEVSLIDDNAAGVEARLLAGEVDLALGNSSNIADDALDFTPLITDPIGVVCLRDNPIAAH
EEEEEECCCCCCCEEEEEECEEEEEECCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCCC
PQGVKWQELLKQPFIRNGTCTLLDPTPARALSQQALYSIENITSLFSVLELGIGITTLPK
CCCCCHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LAFPINQTRLIWIPLTDPPLKRQIGIFKLADRTISPQAQIFLDLCIKYLNATGKSD
HHCCCCCCEEEEEECCCCCHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNIKHQQLNHFVMVVEEGGFRAASNRANRSQAALSTSIKELEKILGQPLFEAGNKLTLTP
CCCCHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCEEEECC
FGNICLPKIRLFLNAYGSLVNDLRAAAAGQQGRVRIASVPSVAAKLIPSVLAEFCEKYPK
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCC
VEVSLIDDNAAGVEARLLAGEVDLALGNSSNIADDALDFTPLITDPIGVVCLRDNPIAAH
EEEEEECCCCCCCEEEEEECEEEEEECCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCCC
PQGVKWQELLKQPFIRNGTCTLLDPTPARALSQQALYSIENITSLFSVLELGIGITTLPK
CCCCCHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LAFPINQTRLIWIPLTDPPLKRQIGIFKLADRTISPQAQIFLDLCIKYLNATGKSD
HHCCCCCCEEEEEECCCCCHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]