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The map label for this gene is ydhC [H]

Identifier: 119945782

GI number: 119945782

Start: 2577630

End: 2578310

Strand: Direct

Name: ydhC [H]

Synonym: Ping_2118

Alternate gene names: 119945782

Gene position: 2577630-2578310 (Clockwise)

Preceding gene: 119945775

Following gene: 119945784

Centisome position: 56.53

GC content: 38.18

Gene sequence:

>681_bases
ATGGAAAAGAAAAAGCCTGTGCTTGGTTTTGAAGGTGTCGATGTTTCTCTTGCAGGGTCTGCCTCAAGTATTGTGTTCGA
AACATTAAGACAAGCAATTATTGAAGGGAAATTACCCGACGGAACTCCTCTTCGCCAAGAAGAGCTCGCTAAGAAGTTTA
ATACTAGTCGCATACCCATTAGAGAGACGATTGCACGTTTAGAACAAGAAGGTTTTGTAGAGACAATTCGCTATAAAGGA
GCCATAGTGACAGCTATTTCTTATAAAGAAGTTGAAGAGATGTTTGATCTCAGAGCTATTATAGAAGGCGAAATTATCTA
TAAGGCTGTCCCTAAGATAGACTCTGCCACCTTAAAAAAAGCAGAATCATTTTGCGAAAAATTTGCAGCATCAAAGACGC
CTGAAGAATGGACTAAGTATAATCGTCTATTTCACTGCACACTTTACGATGCAGCCAACTTAGATTTTCATATGTCTATC
ATTCATTCAATTCTAGACCGAACGGAGAGATACTTAAGGGCGCAACTTGTTCTATCTGATGGTATGAACCGAGCAATCAA
TGAACACCAAAAATTACTTGAATTTTGTCGTGATAAAAATGCGCTAGCAGCTAAATCTATCACCCTCGAACACATACAAC
ATGCCAAACGCTCTCTGCTAAAATTTTTAAATGAAAAATAA

Upstream 100 bases:

>100_bases
CCAATATACAATGTAATTTTTATAGATATTTTCATGTAAAATATTGAGCTTTCAGTTAGAATCGGAAGGATTTTAACGTG
TCTAGTCTAGGTATATATCC

Downstream 100 bases:

>100_bases
AAGCGGTCGCATTTGCTTTGTATTCTCTCATTCCAATATGCAAAGTTAATGGGGGCTATGGAGCCAAAGGGGGCTAATGG
TTAAACATTACACATAAAAA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MEKKKPVLGFEGVDVSLAGSASSIVFETLRQAIIEGKLPDGTPLRQEELAKKFNTSRIPIRETIARLEQEGFVETIRYKG
AIVTAISYKEVEEMFDLRAIIEGEIIYKAVPKIDSATLKKAESFCEKFAASKTPEEWTKYNRLFHCTLYDAANLDFHMSI
IHSILDRTERYLRAQLVLSDGMNRAINEHQKLLEFCRDKNALAAKSITLEHIQHAKRSLLKFLNEK

Sequences:

>Translated_226_residues
MEKKKPVLGFEGVDVSLAGSASSIVFETLRQAIIEGKLPDGTPLRQEELAKKFNTSRIPIRETIARLEQEGFVETIRYKG
AIVTAISYKEVEEMFDLRAIIEGEIIYKAVPKIDSATLKKAESFCEKFAASKTPEEWTKYNRLFHCTLYDAANLDFHMSI
IHSILDRTERYLRAQLVLSDGMNRAINEHQKLLEFCRDKNALAAKSITLEHIQHAKRSLLKFLNEK
>Mature_226_residues
MEKKKPVLGFEGVDVSLAGSASSIVFETLRQAIIEGKLPDGTPLRQEELAKKFNTSRIPIRETIARLEQEGFVETIRYKG
AIVTAISYKEVEEMFDLRAIIEGEIIYKAVPKIDSATLKKAESFCEKFAASKTPEEWTKYNRLFHCTLYDAANLDFHMSI
IHSILDRTERYLRAQLVLSDGMNRAINEHQKLLEFCRDKNALAAKSITLEHIQHAKRSLLKFLNEK

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25819; Mature: 25819

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKKKPVLGFEGVDVSLAGSASSIVFETLRQAIIEGKLPDGTPLRQEELAKKFNTSRIPI
CCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCH
RETIARLEQEGFVETIRYKGAIVTAISYKEVEEMFDLRAIIEGEIIYKAVPKIDSATLKK
HHHHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
AESFCEKFAASKTPEEWTKYNRLFHCTLYDAANLDFHMSIIHSILDRTERYLRAQLVLSD
HHHHHHHHHCCCCHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GMNRAINEHQKLLEFCRDKNALAAKSITLEHIQHAKRSLLKFLNEK
CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEKKKPVLGFEGVDVSLAGSASSIVFETLRQAIIEGKLPDGTPLRQEELAKKFNTSRIPI
CCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCH
RETIARLEQEGFVETIRYKGAIVTAISYKEVEEMFDLRAIIEGEIIYKAVPKIDSATLKK
HHHHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
AESFCEKFAASKTPEEWTKYNRLFHCTLYDAANLDFHMSIIHSILDRTERYLRAQLVLSD
HHHHHHHHHCCCCHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GMNRAINEHQKLLEFCRDKNALAAKSITLEHIQHAKRSLLKFLNEK
CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]