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The map label for this gene is yhjK [H]

Identifier: 119945769

GI number: 119945769

Start: 2557793

End: 2559022

Strand: Reverse

Name: yhjK [H]

Synonym: Ping_2103

Alternate gene names: 119945769

Gene position: 2559022-2557793 (Counterclockwise)

Preceding gene: 119945770

Following gene: 119945768

Centisome position: 56.12

GC content: 38.21

Gene sequence:

>1230_bases
ATGGCGTTATACGAACATCTGGAAGAGATCATTGTGAGCGAGCAGTTAACTTCCTTATTCCAGCCAATATATGCCACAAA
TAGCAGTGAAGTTTATGGTTACGAAGCTTTAATCAGAGGGCCTTACGACAGTCCTCTACATAATCCGGAAGCGCTATTTG
ATGCTGCAATTGAATATAATTTACTGTCGGAATTAGAGCTTATTTGCCGCAAAAAATCCATTGCCCGTTTTGTTGAATTA
GGGTTAAAAGGGTTGTTATTTATTAATGTTAACCCGATGGTATTTTTACAATCTGATCATCCGCAGGGTAAAACACTTTC
TTATTTAACAGAGCATAAATTAAAGCCAGAGCAGGTTGTTATAGAGCTGAGTGAAAAATATCCGATTGATGACCCTGACA
TTTTACAAAAAGCCTTAATATATTATCGTGATCTTGGTTTTAAAATTGCGGTTGATGATTTGGGCTCAGGTTATGCGGGC
TTGAAACTGTGGTCTGAGGTGAAACCTGATTTTGTTAAAATAGATCGTTATTTTATTGACCAGTGTGATAAAGATCCTAT
AAAAAGTGAGTTTATCAAAAGTATTTTCAATTTAGGGCAAAGAATTAATGCCAAAGTCATTGCAGAAGGGATTGAAACAG
AAGAAGAATTTTGGCTATTAGATGAACTAGGTATTAGTATTTATCAGGGTTTTTTATTTGCCAGGCCAATGTTGTCTCCA
TCGGCTACTGTCTCCGCTGTGATCCAAAATCGTGATCGTTTGGCGAATCTTGCGCTTAATAATGAATCTTTGCTTAGCCC
GTTATTACAAATAATAATCCCAGTCAATTTTGATCAAACAACAAAAACAGTGCTGGATTATCTTCACCAACACCCCGAGC
TGGATTCTATTCCTGTGGTTAAAGAAGATAAGCCTGTGGGTATGATTTTACGTGAACATATTTTAGCTTTATTTTCTACG
CCTTACGGTAAAACCCTGCATGAAAATAAACCTATCCATGAAAACATGATCGATTCTCCCGTTATTGTTGAAGCAAAGAC
GCCACTTGATGAAGTGGCTCAATGGGTCACGTGCGGAGATGATGAAAAATTATTATGGCATTTTATCATTGCAGATAAGG
GACGTTATCTTGGAATCGGCTCAGTGCGTGATCTGTTACGCCAGTTAATTCAACCGAACACTCGCTCGGCCAACTCAGTA
ACGCGCTTGCCAACTATTTTCGCTGCTTAA

Upstream 100 bases:

>100_bases
CGGAAATGCAGGGTTAATGTCCCATTTTTATTAACTGTCATATTTATTTAACATTAATGTAATAAGCTTTGTAAAAAAAT
TGTTAAGGATGACCAAAAAT

Downstream 100 bases:

>100_bases
TGGTTATACGCTTAAAGGTTGAATCTGCCCTAGTGACAGAAGTATGGTTATAAAATGGGTGGCATGGTTGTTGGCGGAGG
AAGTGATATTGCAGCGCGAT

Product: cyclic-di-GMP regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 408

Protein sequence:

>409_residues
MALYEHLEEIIVSEQLTSLFQPIYATNSSEVYGYEALIRGPYDSPLHNPEALFDAAIEYNLLSELELICRKKSIARFVEL
GLKGLLFINVNPMVFLQSDHPQGKTLSYLTEHKLKPEQVVIELSEKYPIDDPDILQKALIYYRDLGFKIAVDDLGSGYAG
LKLWSEVKPDFVKIDRYFIDQCDKDPIKSEFIKSIFNLGQRINAKVIAEGIETEEEFWLLDELGISIYQGFLFARPMLSP
SATVSAVIQNRDRLANLALNNESLLSPLLQIIIPVNFDQTTKTVLDYLHQHPELDSIPVVKEDKPVGMILREHILALFST
PYGKTLHENKPIHENMIDSPVIVEAKTPLDEVAQWVTCGDDEKLLWHFIIADKGRYLGIGSVRDLLRQLIQPNTRSANSV
TRLPTIFAA

Sequences:

>Translated_409_residues
MALYEHLEEIIVSEQLTSLFQPIYATNSSEVYGYEALIRGPYDSPLHNPEALFDAAIEYNLLSELELICRKKSIARFVEL
GLKGLLFINVNPMVFLQSDHPQGKTLSYLTEHKLKPEQVVIELSEKYPIDDPDILQKALIYYRDLGFKIAVDDLGSGYAG
LKLWSEVKPDFVKIDRYFIDQCDKDPIKSEFIKSIFNLGQRINAKVIAEGIETEEEFWLLDELGISIYQGFLFARPMLSP
SATVSAVIQNRDRLANLALNNESLLSPLLQIIIPVNFDQTTKTVLDYLHQHPELDSIPVVKEDKPVGMILREHILALFST
PYGKTLHENKPIHENMIDSPVIVEAKTPLDEVAQWVTCGDDEKLLWHFIIADKGRYLGIGSVRDLLRQLIQPNTRSANSV
TRLPTIFAA
>Mature_408_residues
ALYEHLEEIIVSEQLTSLFQPIYATNSSEVYGYEALIRGPYDSPLHNPEALFDAAIEYNLLSELELICRKKSIARFVELG
LKGLLFINVNPMVFLQSDHPQGKTLSYLTEHKLKPEQVVIELSEKYPIDDPDILQKALIYYRDLGFKIAVDDLGSGYAGL
KLWSEVKPDFVKIDRYFIDQCDKDPIKSEFIKSIFNLGQRINAKVIAEGIETEEEFWLLDELGISIYQGFLFARPMLSPS
ATVSAVIQNRDRLANLALNNESLLSPLLQIIIPVNFDQTTKTVLDYLHQHPELDSIPVVKEDKPVGMILREHILALFSTP
YGKTLHENKPIHENMIDSPVIVEAKTPLDEVAQWVTCGDDEKLLWHFIIADKGRYLGIGSVRDLLRQLIQPNTRSANSVT
RLPTIFAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HAMP domain [H]

Homologues:

Organism=Escherichia coli, GI226510982, Length=240, Percent_Identity=32.9166666666667, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI87081921, Length=247, Percent_Identity=27.9352226720648, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI1788502, Length=236, Percent_Identity=28.3898305084746, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI87081980, Length=222, Percent_Identity=27.027027027027, Blast_Score=92, Evalue=8e-20,
Organism=Escherichia coli, GI1787410, Length=220, Percent_Identity=28.6363636363636, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI87082096, Length=220, Percent_Identity=26.8181818181818, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI87081845, Length=121, Percent_Identity=31.404958677686, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1787541, Length=239, Percent_Identity=27.1966527196653, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI1790496, Length=244, Percent_Identity=25, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI87081743, Length=238, Percent_Identity=24.3697478991597, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1787055, Length=230, Percent_Identity=27.3913043478261, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788849, Length=241, Percent_Identity=26.5560165975104, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786507, Length=224, Percent_Identity=24.1071428571429, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003660 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF00672 HAMP [H]

EC number: NA

Molecular weight: Translated: 46424; Mature: 46293

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALYEHLEEIIVSEQLTSLFQPIYATNSSEVYGYEALIRGPYDSPLHNPEALFDAAIEYN
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCHHEEECCCCCCCCCHHHHHHHHHHHH
LLSELELICRKKSIARFVELGLKGLLFINVNPMVFLQSDHPQGKTLSYLTEHKLKPEQVV
HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEECCCCCCCHHHHHHHCCCCHHHEE
IELSEKYPIDDPDILQKALIYYRDLGFKIAVDDLGSGYAGLKLWSEVKPDFVKIDRYFID
EEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHH
QCDKDPIKSEFIKSIFNLGQRINAKVIAEGIETEEEFWLLDELGISIYQGFLFARPMLSP
CCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
SATVSAVIQNRDRLANLALNNESLLSPLLQIIIPVNFDQTTKTVLDYLHQHPELDSIPVV
CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCC
KEDKPVGMILREHILALFSTPYGKTLHENKPIHENMIDSPVIVEAKTPLDEVAQWVTCGD
CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHCCC
DEKLLWHFIIADKGRYLGIGSVRDLLRQLIQPNTRSANSVTRLPTIFAA
CCCEEEEEEEECCCCEEECHHHHHHHHHHHCCCCCCCCCHHHCCHHHCC
>Mature Secondary Structure 
ALYEHLEEIIVSEQLTSLFQPIYATNSSEVYGYEALIRGPYDSPLHNPEALFDAAIEYN
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCHHEEECCCCCCCCCHHHHHHHHHHHH
LLSELELICRKKSIARFVELGLKGLLFINVNPMVFLQSDHPQGKTLSYLTEHKLKPEQVV
HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEECCCCCCCHHHHHHHCCCCHHHEE
IELSEKYPIDDPDILQKALIYYRDLGFKIAVDDLGSGYAGLKLWSEVKPDFVKIDRYFID
EEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHH
QCDKDPIKSEFIKSIFNLGQRINAKVIAEGIETEEEFWLLDELGISIYQGFLFARPMLSP
CCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
SATVSAVIQNRDRLANLALNNESLLSPLLQIIIPVNFDQTTKTVLDYLHQHPELDSIPVV
CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCC
KEDKPVGMILREHILALFSTPYGKTLHENKPIHENMIDSPVIVEAKTPLDEVAQWVTCGD
CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHCCC
DEKLLWHFIIADKGRYLGIGSVRDLLRQLIQPNTRSANSVTRLPTIFAA
CCCEEEEEEEECCCCEEECHHHHHHHHHHHCCCCCCCCCHHHCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 10493123 [H]