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The map label for this gene is yhdW [H]

Identifier: 119945759

GI number: 119945759

Start: 2547389

End: 2548141

Strand: Reverse

Name: yhdW [H]

Synonym: Ping_2092

Alternate gene names: 119945759

Gene position: 2548141-2547389 (Counterclockwise)

Preceding gene: 119945765

Following gene: 119945758

Centisome position: 55.89

GC content: 38.65

Gene sequence:

>753_bases
ATGAAAATAACAGCGCATAGAGGAGGTTCTAGTCTGGCGCCAGAAAATACTCTGGCAGCTTTTAATAAGGCAGCTGAACT
GGGTTGTGAGTGGATTGAAATTGACGTCCAGCTGAGTATAGATGAGGTTCCTGTTGTTATTCATGATCAAACAGTTGAAC
GCTGTACCGATGGCAGTGGTGCTGTGTCATCCATGACTTTAGACAGCCTGAAATCACTGGATGCCGGGTTATGGTTTGGA
GAAGAATTTCGAGATGAACGTATTCCGACTCTGGAAGAAACGTTATTATTGGCAAGAAATACCAACCTCAACGTGAATAT
TGAGATAAAACTCTATCGGCAAGATGATCTTGTTCTGCTTTGTGAAAAAATCAAAAAAGTTATTATTGATTTGGACGTGG
AAGCATCTCAAATATTATTTTCGAGCTTTAATATAGAGGCATTAAAATACATGCAATACCATCAACCTCAAATTCGCCGG
GGTCTACTGGTAGAAACAATTCCTGCTAATGTACTTTTATTATTAGCTGAAATTGAAGCTTACAGCCTGCACTGCAATTA
CGTTTTTTTGAAGGAACAACAAGCAAAATTGATAAAAAAAAGCGGTTACCAACTTTACTGCTACACCCCTAATTCACCTC
AGCAGGTTAGTCAGCATTGGGATTGGGGGGTCGACATGATGATCACCGATGTACCACAAGCCTATATCAATATTTTGACC
TACGATAAATTTAAATTAATAAACTCTAATTAA

Upstream 100 bases:

>100_bases
ATGATGTTCACAGTTATGTTGTCAATATTTTCAGGTGCAATAAAACGGTCATAAAGTTTTGCTAGGCTTTATTTTTAATT
AATTAATTATTGGAATAATA

Downstream 100 bases:

>100_bases
TAAACTCTAATTAATAAACAAGGCAGGAACCTCACACTAGCCATGCAGAAACTCAGTCTTCGTCAACAGACAATAATAGA
TATGATTGGTCATCAAGAGT

Product: glycerophosphodiester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MKITAHRGGSSLAPENTLAAFNKAAELGCEWIEIDVQLSIDEVPVVIHDQTVERCTDGSGAVSSMTLDSLKSLDAGLWFG
EEFRDERIPTLEETLLLARNTNLNVNIEIKLYRQDDLVLLCEKIKKVIIDLDVEASQILFSSFNIEALKYMQYHQPQIRR
GLLVETIPANVLLLLAEIEAYSLHCNYVFLKEQQAKLIKKSGYQLYCYTPNSPQQVSQHWDWGVDMMITDVPQAYINILT
YDKFKLINSN

Sequences:

>Translated_250_residues
MKITAHRGGSSLAPENTLAAFNKAAELGCEWIEIDVQLSIDEVPVVIHDQTVERCTDGSGAVSSMTLDSLKSLDAGLWFG
EEFRDERIPTLEETLLLARNTNLNVNIEIKLYRQDDLVLLCEKIKKVIIDLDVEASQILFSSFNIEALKYMQYHQPQIRR
GLLVETIPANVLLLLAEIEAYSLHCNYVFLKEQQAKLIKKSGYQLYCYTPNSPQQVSQHWDWGVDMMITDVPQAYINILT
YDKFKLINSN
>Mature_250_residues
MKITAHRGGSSLAPENTLAAFNKAAELGCEWIEIDVQLSIDEVPVVIHDQTVERCTDGSGAVSSMTLDSLKSLDAGLWFG
EEFRDERIPTLEETLLLARNTNLNVNIEIKLYRQDDLVLLCEKIKKVIIDLDVEASQILFSSFNIEALKYMQYHQPQIRR
GLLVETIPANVLLLLAEIEAYSLHCNYVFLKEQQAKLIKKSGYQLYCYTPNSPQQVSQHWDWGVDMMITDVPQAYINILT
YDKFKLINSN

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Homo sapiens, GI7706617, Length=244, Percent_Identity=28.2786885245902, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI33457301, Length=123, Percent_Identity=34.9593495934959, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI284055245, Length=88, Percent_Identity=38.6363636363636, Blast_Score=65, Evalue=8e-11,
Organism=Homo sapiens, GI284055240, Length=88, Percent_Identity=38.6363636363636, Blast_Score=65, Evalue=8e-11,
Organism=Escherichia coli, GI1789858, Length=230, Percent_Identity=33.4782608695652, Blast_Score=134, Evalue=4e-33,
Organism=Caenorhabditis elegans, GI17561436, Length=168, Percent_Identity=29.7619047619048, Blast_Score=70, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 28458; Mature: 28458

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: PS50007 PIPLC_X_DOMAIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKITAHRGGSSLAPENTLAAFNKAAELGCEWIEIDVQLSIDEVPVVIHDQTVERCTDGSG
CEEECCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEEEEECCEEEEEECCHHHHCCCCCC
AVSSMTLDSLKSLDAGLWFGEEFRDERIPTLEETLLLARNTNLNVNIEIKLYRQDDLVLL
CCHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHHEEEEECCCEEEEEEEEEEECCCHHHH
CEKIKKVIIDLDVEASQILFSSFNIEALKYMQYHQPQIRRGLLVETIPANVLLLLAEIEA
HHHHHHHEEECCCCHHHHHHCCCCHHHHHHHHHCCCHHHCCEEEEECCHHEEEEEEEEEE
YSLHCNYVFLKEQQAKLIKKSGYQLYCYTPNSPQQVSQHWDWGVDMMITDVPQAYINILT
EEEEEEEEEEECHHHHHHHHCCCEEEEECCCCHHHHHHHCCCCCEEEEECCCHHHHEEEE
YDKFKLINSN
ECEEEEECCC
>Mature Secondary Structure
MKITAHRGGSSLAPENTLAAFNKAAELGCEWIEIDVQLSIDEVPVVIHDQTVERCTDGSG
CEEECCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEEEEECCEEEEEECCHHHHCCCCCC
AVSSMTLDSLKSLDAGLWFGEEFRDERIPTLEETLLLARNTNLNVNIEIKLYRQDDLVLL
CCHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHHEEEEECCCEEEEEEEEEEECCCHHHH
CEKIKKVIIDLDVEASQILFSSFNIEALKYMQYHQPQIRRGLLVETIPANVLLLLAEIEA
HHHHHHHEEECCCCHHHHHHCCCCHHHHHHHHHCCCHHHCCEEEEECCHHEEEEEEEEEE
YSLHCNYVFLKEQQAKLIKKSGYQLYCYTPNSPQQVSQHWDWGVDMMITDVPQAYINILT
EEEEEEEEEEECHHHHHHHHCCCEEEEECCCCHHHHHHHCCCCCEEEEECCCHHHHEEEE
YDKFKLINSN
ECEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]