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The map label for this gene is ycdJ [C]

Identifier: 119945755

GI number: 119945755

Start: 2538886

End: 2539770

Strand: Reverse

Name: ycdJ [C]

Synonym: Ping_2087

Alternate gene names: 119945755

Gene position: 2539770-2538886 (Counterclockwise)

Preceding gene: 119945757

Following gene: 119945751

Centisome position: 55.7

GC content: 43.84

Gene sequence:

>885_bases
ATGATATTTGAAGATCAATTTACTAAGACAACAGTGAAGACAACGGGCGCGCAAATCAATGTGCTACAGGGGGGATCGGG
TGCGCCATTATTGCTTTTACATGGTTACCCGCAAACTCATGTTATGTGGCACGAGATTGCGCCATCTCTTATGCAACATT
TTCATTTAATTTGTCCGGATCTTAGAGGATATGGTGATAGTTCAAAGCCCTTTGGCAGTGCAGATCACGCCACTTATTCT
AAGCGTGAGATGGCTAAAGATATGATCGAGGTGATGGAAAGCCTAGGATATAGTGAGTTTTTTGTCGCGGGTCATGACCG
TGGTGCTCGCGTTGTCCACCGTATGGCATTAGACTATCCTGAAAAAATCAAGAAAGCCTGTGTGATGGATATTGTTCCCA
CGCATCACATGTTTAAAACGACTGATCAGCAATTTGCGACGGGTTACTACCACTGGTATTTTCTTATTCAACCGGACAAT
CTCCCTGAACGTATGATTGGCGCTGATCCGGCTTACTATTTGGGTGAAAGTCTAAAAAGATGGAGTGCTTCGGGCGCCGT
ATTTAAAAAAGAAGCCGTTGATGAATATATACGCTGTTTTAGCAGCGCAGAAACAATTCATGCTTCCTGCGAAGATTACC
GTGCTGCTGCAAGCATTGACCTAAAGCATGATCAACAAGACATGAGTCAAAAAATGCTCTCTCCTTTGCTAGTTCTGTGG
GGAGCCGAGGGATTTATTGAGCGTAATTATAATGTGCTGGATGTATGGCGAGAACATGCTGTAGATGTACAAGGGAAAAG
CTTGCAGTGTGGACACTTCTTGGCAGAAGAGGCACCCTTGGCAGTTTGTGAAGAACTGCTTCGATTTTTTGACTATCCAA
AATAA

Upstream 100 bases:

>100_bases
GTATTAAAAGAGATGCTCAATTGCGGCATAAAAAGGGTAAAAGTACCCGCAGTGTCAATCCAAAATTCTAAAGATCAATG
CAGTTTTTTAAGGATAAAAA

Downstream 100 bases:

>100_bases
GCGCCTTAGTATATTTTTACTGTTCAAATAGAATATATACCGGGCGTTATACGGGGTGGTGACGAAGAGCGTGTCGACCT
TGCGGTGATGGCCTAAAATG

Product: alpha/beta hydrolase fold

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MIFEDQFTKTTVKTTGAQINVLQGGSGAPLLLLHGYPQTHVMWHEIAPSLMQHFHLICPDLRGYGDSSKPFGSADHATYS
KREMAKDMIEVMESLGYSEFFVAGHDRGARVVHRMALDYPEKIKKACVMDIVPTHHMFKTTDQQFATGYYHWYFLIQPDN
LPERMIGADPAYYLGESLKRWSASGAVFKKEAVDEYIRCFSSAETIHASCEDYRAAASIDLKHDQQDMSQKMLSPLLVLW
GAEGFIERNYNVLDVWREHAVDVQGKSLQCGHFLAEEAPLAVCEELLRFFDYPK

Sequences:

>Translated_294_residues
MIFEDQFTKTTVKTTGAQINVLQGGSGAPLLLLHGYPQTHVMWHEIAPSLMQHFHLICPDLRGYGDSSKPFGSADHATYS
KREMAKDMIEVMESLGYSEFFVAGHDRGARVVHRMALDYPEKIKKACVMDIVPTHHMFKTTDQQFATGYYHWYFLIQPDN
LPERMIGADPAYYLGESLKRWSASGAVFKKEAVDEYIRCFSSAETIHASCEDYRAAASIDLKHDQQDMSQKMLSPLLVLW
GAEGFIERNYNVLDVWREHAVDVQGKSLQCGHFLAEEAPLAVCEELLRFFDYPK
>Mature_294_residues
MIFEDQFTKTTVKTTGAQINVLQGGSGAPLLLLHGYPQTHVMWHEIAPSLMQHFHLICPDLRGYGDSSKPFGSADHATYS
KREMAKDMIEVMESLGYSEFFVAGHDRGARVVHRMALDYPEKIKKACVMDIVPTHHMFKTTDQQFATGYYHWYFLIQPDN
LPERMIGADPAYYLGESLKRWSASGAVFKKEAVDEYIRCFSSAETIHASCEDYRAAASIDLKHDQQDMSQKMLSPLLVLW
GAEGFIERNYNVLDVWREHAVDVQGKSLQCGHFLAEEAPLAVCEELLRFFDYPK

Specific function: Catalyzes the hydrolytic defluorination of fluoroacetate to produce glycolate. Has low activity towards chloroacetate [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AB hydrolase superfamily. Epoxide hydrolase family [H]

Homologues:

Organism=Homo sapiens, GI218777837, Length=248, Percent_Identity=27.4193548387097, Blast_Score=85, Evalue=7e-17,
Organism=Homo sapiens, GI218777840, Length=241, Percent_Identity=25.7261410788382, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI13376164, Length=241, Percent_Identity=25.7261410788382, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI27597073, Length=308, Percent_Identity=20.4545454545455, Blast_Score=71, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17554012, Length=294, Percent_Identity=27.2108843537415, Blast_Score=81, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR000639 [H]

Pfam domain/function: PF00561 Abhydrolase_1 [H]

EC number: =3.8.1.3 [H]

Molecular weight: Translated: 33468; Mature: 33468

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFEDQFTKTTVKTTGAQINVLQGGSGAPLLLLHGYPQTHVMWHEIAPSLMQHFHLICPD
CCCCCCHHHHHEEECCCEEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCH
LRGYGDSSKPFGSADHATYSKREMAKDMIEVMESLGYSEFFVAGHDRGARVVHRMALDYP
HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCH
EKIKKACVMDIVPTHHMFKTTDQQFATGYYHWYFLIQPDNLPERMIGADPAYYLGESLKR
HHHHHHHHHHCCCCCHHHHCCCHHHHCCEEEEEEEECCCCCCHHHHCCCHHHHHHHHHHH
WSASGAVFKKEAVDEYIRCFSSAETIHASCEDYRAAASIDLKHDQQDMSQKMLSPLLVLW
HCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHH
GAEGFIERNYNVLDVWREHAVDVQGKSLQCGHFLAEEAPLAVCEELLRFFDYPK
CCCHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MIFEDQFTKTTVKTTGAQINVLQGGSGAPLLLLHGYPQTHVMWHEIAPSLMQHFHLICPD
CCCCCCHHHHHEEECCCEEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCH
LRGYGDSSKPFGSADHATYSKREMAKDMIEVMESLGYSEFFVAGHDRGARVVHRMALDYP
HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCH
EKIKKACVMDIVPTHHMFKTTDQQFATGYYHWYFLIQPDNLPERMIGADPAYYLGESLKR
HHHHHHHHHHCCCCCHHHHCCCHHHHCCEEEEEEEECCCCCCHHHHCCCHHHHHHHHHHH
WSASGAVFKKEAVDEYIRCFSSAETIHASCEDYRAAASIDLKHDQQDMSQKMLSPLLVLW
HCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHH
GAEGFIERNYNVLDVWREHAVDVQGKSLQCGHFLAEEAPLAVCEELLRFFDYPK
CCCHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA