BacMap

Definition	Psychromonas ingrahamii 37, complete genome.
Accession	NC_008709
Length	4,559,598

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The map label for this gene is yciK [H]

Identifier: 119945660

GI number: 119945660

Start: 2400666

End: 2401403

Strand: Direct

Name: yciK [H]

Synonym: Ping_1973

Alternate gene names: 119945660

Gene position: 2400666-2401403 (Clockwise)

Preceding gene: 119945647

Following gene: 119945665

Centisome position: 52.65

GC content: 43.5

Gene sequence:

>738_bases
ATGAATGAATTTAAAGCACAACCTGACTCTTTAAACGGAAAAACCATTCTAATTACAGGGGCTGGCGCAGGTATTGGTAA
GACGCTCGCTTTACACTGTGCAACCCTCGGTGCAAAAGTCATACTATTAGGCAAGACAGTAAAAAAATTAGAAGCGGTTT
ATGATCAAATAGAATTACAGGGTAAACAACAAGCGGCTATTTTGCCCGTTGATTTAAATGGCGCTACCGAGGAGCATTAT
GCTGACTTAGCGGATACCATAAAACGTGAATATGGGAAACTGGATGCACTGGTACATAACGCAAGTCAGTTGGGTGTACT
GGGCCCTTTCGCTCAAATTGAGAAATCGACCTGGGACGAGATAATACAAACTAATGTAACGGCTCAATTTTTATTAACCA
AAGCGTTAATTCCAGTACTTAGTCTGGCCCCGCAGGCATCGGTGATTTTCACCACATCAAGTGTTGGTCATGCAGGCCGA
GCATACTGGGGAGCTTATAGTATTTCTAAGTTTGCAAGCGAAGGCATGATGCAGGTTTTAGCCGATGAATATGAGCATAG
TTCATTACGTTTTAACGCCATTAATCCGGGTGCCACACGCACAGAAATGCGCGCCAGTGCCTACCCTGCAGAAGATAGCT
CTCTCTTAAAAACGGCGACAGATATTATGCCTAGCTATTTGTATTTATTAAGTGATGCGAGTAAAGGCGTTACCGGGCAG
CGAATCAATGCACAGTAA

Upstream 100 bases:

>100_bases
GCCATATAATGACAAAAAGCACGGCCAGGCACAAAAGAGATTGAGTCTTTTATTAAAATAAAGTTAAGATTGTCGCTTAT
TTAACAATATACGAGACAAT

Downstream 100 bases:

>100_bases
AGCTATATTACTGTCTGAGAATTAACGGTTTAGATAAGTACAAAAACAAAAAAGGGGGTATTTTGAACCGCCCCCCAAAA
ACTTATTTGTAGATATCGAC

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MNEFKAQPDSLNGKTILITGAGAGIGKTLALHCATLGAKVILLGKTVKKLEAVYDQIELQGKQQAAILPVDLNGATEEHY
ADLADTIKREYGKLDALVHNASQLGVLGPFAQIEKSTWDEIIQTNVTAQFLLTKALIPVLSLAPQASVIFTTSSVGHAGR
AYWGAYSISKFASEGMMQVLADEYEHSSLRFNAINPGATRTEMRASAYPAEDSSLLKTATDIMPSYLYLLSDASKGVTGQ
RINAQ

Sequences:

>Translated_245_residues
MNEFKAQPDSLNGKTILITGAGAGIGKTLALHCATLGAKVILLGKTVKKLEAVYDQIELQGKQQAAILPVDLNGATEEHY
ADLADTIKREYGKLDALVHNASQLGVLGPFAQIEKSTWDEIIQTNVTAQFLLTKALIPVLSLAPQASVIFTTSSVGHAGR
AYWGAYSISKFASEGMMQVLADEYEHSSLRFNAINPGATRTEMRASAYPAEDSSLLKTATDIMPSYLYLLSDASKGVTGQ
RINAQ
>Mature_245_residues
MNEFKAQPDSLNGKTILITGAGAGIGKTLALHCATLGAKVILLGKTVKKLEAVYDQIELQGKQQAAILPVDLNGATEEHY
ADLADTIKREYGKLDALVHNASQLGVLGPFAQIEKSTWDEIIQTNVTAQFLLTKALIPVLSLAPQASVIFTTSSVGHAGR
AYWGAYSISKFASEGMMQVLADEYEHSSLRFNAINPGATRTEMRASAYPAEDSSLLKTATDIMPSYLYLLSDASKGVTGQ
RINAQ

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI19923817, Length=257, Percent_Identity=24.9027237354086, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI4503817, Length=201, Percent_Identity=27.8606965174129, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI4504505, Length=239, Percent_Identity=27.1966527196653, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI32483357, Length=193, Percent_Identity=27.979274611399, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI142976729, Length=178, Percent_Identity=31.4606741573034, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI157739938, Length=194, Percent_Identity=27.8350515463918, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI7657478, Length=218, Percent_Identity=25.6880733944954, Blast_Score=67, Evalue=1e-11,
Organism=Escherichia coli, GI1787526, Length=242, Percent_Identity=47.9338842975207, Blast_Score=218, Evalue=4e-58,
Organism=Escherichia coli, GI1790717, Length=195, Percent_Identity=31.2820512820513, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI87082100, Length=222, Percent_Identity=31.981981981982, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787335, Length=239, Percent_Identity=27.1966527196653, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI87082160, Length=251, Percent_Identity=26.6932270916335, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787905, Length=246, Percent_Identity=28.8617886178862, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786812, Length=203, Percent_Identity=27.5862068965517, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1789208, Length=244, Percent_Identity=25, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1789378, Length=244, Percent_Identity=27.8688524590164, Blast_Score=61, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17560676, Length=207, Percent_Identity=26.5700483091787, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17561402, Length=247, Percent_Identity=25.5060728744939, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI71994604, Length=189, Percent_Identity=29.1005291005291, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17544670, Length=204, Percent_Identity=27.4509803921569, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17562906, Length=207, Percent_Identity=28.0193236714976, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17562908, Length=198, Percent_Identity=28.2828282828283, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17570069, Length=195, Percent_Identity=27.1794871794872, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71997402, Length=194, Percent_Identity=27.319587628866, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17536025, Length=200, Percent_Identity=30.5, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17560220, Length=205, Percent_Identity=27.8048780487805, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71994600, Length=241, Percent_Identity=28.6307053941909, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17555706, Length=246, Percent_Identity=25.609756097561, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17559104, Length=223, Percent_Identity=28.2511210762332, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17562904, Length=197, Percent_Identity=26.3959390862944, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17536651, Length=196, Percent_Identity=28.0612244897959, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI193203117, Length=175, Percent_Identity=29.1428571428571, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI193204405, Length=207, Percent_Identity=28.5024154589372, Blast_Score=64, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI193203115, Length=175, Percent_Identity=29.1428571428571, Blast_Score=64, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17555612, Length=221, Percent_Identity=27.6018099547511, Blast_Score=64, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17562910, Length=207, Percent_Identity=27.0531400966184, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=237, Percent_Identity=28.2700421940928, Blast_Score=77, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6323882, Length=227, Percent_Identity=26.8722466960352, Blast_Score=75, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6322227, Length=200, Percent_Identity=27.5, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI21355319, Length=244, Percent_Identity=25.8196721311475, Blast_Score=91, Evalue=9e-19,
Organism=Drosophila melanogaster, GI24643142, Length=248, Percent_Identity=31.0483870967742, Blast_Score=88, Evalue=4e-18,
Organism=Drosophila melanogaster, GI23397609, Length=196, Percent_Identity=32.6530612244898, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24644339, Length=197, Percent_Identity=32.48730964467, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI21357041, Length=197, Percent_Identity=29.9492385786802, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI28571526, Length=198, Percent_Identity=29.7979797979798, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24640492, Length=194, Percent_Identity=28.3505154639175, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI45553409, Length=201, Percent_Identity=29.8507462686567, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24647948, Length=201, Percent_Identity=29.8507462686567, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24647946, Length=201, Percent_Identity=29.8507462686567, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI281364892, Length=236, Percent_Identity=28.8135593220339, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI21358495, Length=220, Percent_Identity=26.8181818181818, Blast_Score=71, Evalue=8e-13,
Organism=Drosophila melanogaster, GI21356301, Length=238, Percent_Identity=23.9495798319328, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26261; Mature: 26261

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEFKAQPDSLNGKTILITGAGAGIGKTLALHCATLGAKVILLGKTVKKLEAVYDQIELQ
CCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHCC
GKQQAAILPVDLNGATEEHYADLADTIKREYGKLDALVHNASQLGVLGPFAQIEKSTWDE
CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCHHHHHHHHHHH
IIQTNVTAQFLLTKALIPVLSLAPQASVIFTTSSVGHAGRAYWGAYSISKFASEGMMQVL
HHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
ADEYEHSSLRFNAINPGATRTEMRASAYPAEDSSLLKTATDIMPSYLYLLSDASKGVTGQ
HHHHCCCCEEEECCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
RINAQ
CCCCC
>Mature Secondary Structure
MNEFKAQPDSLNGKTILITGAGAGIGKTLALHCATLGAKVILLGKTVKKLEAVYDQIELQ
CCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHCC
GKQQAAILPVDLNGATEEHYADLADTIKREYGKLDALVHNASQLGVLGPFAQIEKSTWDE
CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCHHHHHHHHHHH
IIQTNVTAQFLLTKALIPVLSLAPQASVIFTTSSVGHAGRAYWGAYSISKFASEGMMQVL
HHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
ADEYEHSSLRFNAINPGATRTEMRASAYPAEDSSLLKTATDIMPSYLYLLSDASKGVTGQ
HHHHCCCCEEEECCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
RINAQ
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on the CH-OH group of donors; With NAD or NADP as acceptor [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 1885549 [H]