Click here to switch to the map view.

The map label for this gene is ycjP [C]

Identifier: 119945646

GI number: 119945646

Start: 2381665

End: 2382510

Strand: Direct

Name: ycjP [C]

Synonym: Ping_1958

Alternate gene names: 119945646

Gene position: 2381665-2382510 (Clockwise)

Preceding gene: 119945645

Following gene: 119945647

Centisome position: 52.23

GC content: 42.91

Gene sequence:

>846_bases
ATGAGCATTAATAGAGTATTGATTTATAGCATACTGAGCTTTGTCGCACTTATATATTTAATGCCACTGGTTGTTATGCT
CATCACTTCGCTCAAGGATTTAGATGAAATTCGTTCAGGCACCCTACTATCTTTACCGCAGTCATTAAATTTTGATGCTT
GGGGTAAAGCCTGGGGAACTGCCTGCACCGGCGTAAGCTGTGAAGGTTTAAAAGGTTACTTCTGGAACTCTGTGCTGATC
GTCGTACCGGCGGTTGCAATTTCTACCGTATTAGGCGCGTTAAATGGTTATGTACTGACTAAATGGAAGTTCAAAGGCAG
CGATCTATTTTTTGGTATGTTGTTAATCGGCACTATGATTCCGTTTCAAGTGATCCTGTTACCCATGGCGCGGACTCTGG
GCTTCCTTGGGTTGTCGGGGACTACTTCCGGGTTAATTATGGTTCACGTCATTTATGGTCTGGCATTTACTACCCTGTTT
TTCCGTAATTATTATATTAGTATTCCCAATGAATTGGTGAATGCGGCACGTATTGATGGTGCAGGTTTTTGGCTGATTTT
CTGGCGGATTATTATACCGGTATCAATACCTATTATCGTCGTATCGGTAATCTGGCAATTCACTCAAATCTGGAACGACT
TCTTGTTTGGCGTGGTTTACTCTTCGGGTGATTCGCAGCCGATTACGGTTGCACTGAATAATTTGGTCAATACCAGTACA
GGTATTAAAGAATATAACGTTGATATGGCCGCGGCAATTATTGCTGCACTGCCCACCCTGCTGGTCTATGTAGTAGCCGG
TAAGTATTTCGTTAAAGGTCTCACAGCGGGTGCTGTTAAAGGATAA

Upstream 100 bases:

>100_bases
GGACAAATCGGGCTTGGGTCGGCAGCTTCGATGATGATGTTAATGGCAGTCGCAGCCATTATTGTGCCTTACCTGTATTC
GGAACTAAGGGAGAAGAAAG

Downstream 100 bases:

>100_bases
GGAACACTATTATGCACGCTTTAAAAATACAAAATGTTGAAAAAACCTATGGCAAAGTGAATGTACTAAAGGGCATAGAT
ATAGAAATAGAACCCGGTCA

Product: ABC sugar transporter inner membrane binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 280

Protein sequence:

>281_residues
MSINRVLIYSILSFVALIYLMPLVVMLITSLKDLDEIRSGTLLSLPQSLNFDAWGKAWGTACTGVSCEGLKGYFWNSVLI
VVPAVAISTVLGALNGYVLTKWKFKGSDLFFGMLLIGTMIPFQVILLPMARTLGFLGLSGTTSGLIMVHVIYGLAFTTLF
FRNYYISIPNELVNAARIDGAGFWLIFWRIIIPVSIPIIVVSVIWQFTQIWNDFLFGVVYSSGDSQPITVALNNLVNTST
GIKEYNVDMAAAIIAALPTLLVYVVAGKYFVKGLTAGAVKG

Sequences:

>Translated_281_residues
MSINRVLIYSILSFVALIYLMPLVVMLITSLKDLDEIRSGTLLSLPQSLNFDAWGKAWGTACTGVSCEGLKGYFWNSVLI
VVPAVAISTVLGALNGYVLTKWKFKGSDLFFGMLLIGTMIPFQVILLPMARTLGFLGLSGTTSGLIMVHVIYGLAFTTLF
FRNYYISIPNELVNAARIDGAGFWLIFWRIIIPVSIPIIVVSVIWQFTQIWNDFLFGVVYSSGDSQPITVALNNLVNTST
GIKEYNVDMAAAIIAALPTLLVYVVAGKYFVKGLTAGAVKG
>Mature_280_residues
SINRVLIYSILSFVALIYLMPLVVMLITSLKDLDEIRSGTLLSLPQSLNFDAWGKAWGTACTGVSCEGLKGYFWNSVLIV
VPAVAISTVLGALNGYVLTKWKFKGSDLFFGMLLIGTMIPFQVILLPMARTLGFLGLSGTTSGLIMVHVIYGLAFTTLFF
RNYYISIPNELVNAARIDGAGFWLIFWRIIIPVSIPIIVVSVIWQFTQIWNDFLFGVVYSSGDSQPITVALNNLVNTSTG
IKEYNVDMAAAIIAALPTLLVYVVAGKYFVKGLTAGAVKG

Specific function: Probably part of a binding-protein-dependent transport system PH1214/15/16. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=281, Percent_Identity=28.4697508896797, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1789860, Length=263, Percent_Identity=25.8555133079848, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1790464, Length=288, Percent_Identity=26.3888888888889, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30659; Mature: 30528

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSINRVLIYSILSFVALIYLMPLVVMLITSLKDLDEIRSGTLLSLPQSLNFDAWGKAWGT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHCC
ACTGVSCEGLKGYFWNSVLIVVPAVAISTVLGALNGYVLTKWKFKGSDLFFGMLLIGTMI
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCHHHHHHHHHHHHH
PFQVILLPMARTLGFLGLSGTTSGLIMVHVIYGLAFTTLFFRNYYISIPNELVNAARIDG
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHCCC
AGFWLIFWRIIIPVSIPIIVVSVIWQFTQIWNDFLFGVVYSSGDSQPITVALNNLVNTST
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHCCCC
GIKEYNVDMAAAIIAALPTLLVYVVAGKYFVKGLTAGAVKG
CCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SINRVLIYSILSFVALIYLMPLVVMLITSLKDLDEIRSGTLLSLPQSLNFDAWGKAWGT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHCC
ACTGVSCEGLKGYFWNSVLIVVPAVAISTVLGALNGYVLTKWKFKGSDLFFGMLLIGTMI
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCHHHHHHHHHHHHH
PFQVILLPMARTLGFLGLSGTTSGLIMVHVIYGLAFTTLFFRNYYISIPNELVNAARIDG
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHCCC
AGFWLIFWRIIIPVSIPIIVVSVIWQFTQIWNDFLFGVVYSSGDSQPITVALNNLVNTST
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHCCCC
GIKEYNVDMAAAIIAALPTLLVYVVAGKYFVKGLTAGAVKG
CCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]