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The map label for this gene is ygbD [C]

Identifier: 119945533

GI number: 119945533

Start: 2229316

End: 2230425

Strand: Direct

Name: ygbD [C]

Synonym: Ping_1837

Alternate gene names: 119945533

Gene position: 2229316-2230425 (Clockwise)

Preceding gene: 119945532

Following gene: 119945534

Centisome position: 48.89

GC content: 40.45

Gene sequence:

>1110_bases
ATGAAAAGTCTTGTTTTGATTGGAGGGGGGCATGCACACATGATAACCCTGAGTAAATTAGATACCTTTATATCTAAAGG
GTATCAGGTAACCGTCATTCAACCAGCTGACTATCACTACTATAGTGGCATGGGACCTGGAATGCTGGGTGGTACATACG
AGCCTGATGATATCCGTTTTGCGACTAAAATACTGGTTGAAAGTAAGGGCGGCAGATTTGTCAAAGCACATGCTAGCCGA
ATCGACCCCGAAAAACGAGTTGTGCATCTGCAGGAAAGTGATGAGAAGATTAAATATGATGTTCTCTCTTGTAATGCGGG
ATCTTATGTCCCGAAAAATATTGTTGAAGGGGATAGCGATAACGTTTTTACGGCGAAGCCTATTGAAGAACTAAGCCGAG
CCAAAGAGACTATTCTTAAGAAGTTAAGGGATGGCCCTATTTCAATAGCTGTTCTTGGCGGGGGACCTGCTGCCATTGAG
ATAGCTGGGAATATTCATCAATTATGTAAACAAAAAGCATTACACCAACCGCATATACGGCTTTTTAGTGGGCATGGATT
AATGTCCAAAGTGTCCCCTAGAGTACGAAAGCTTCTCCGTAAGTTGCTGGTTCGTAAAGGCATTGAAATAATAGAAAAAG
GTTATGTTGAAAAAGTTGCCAATGGCAAGATTACCCTAGAAAATGATACGACCTATACTGCTGATATTATCTTTCCGGCG
ATAGGTGTTAAGCCGTCGACAATTTTTTCCCGATCAGGCCTGGATATTGGTCCTGAGGGCGGTTTAAAAGTGAATTCATT
TTTACAATCGACCAGTCACACCCCTATTTTTGGAGGCGGTGATTGTATCTATTATGCTGATCAACCACTTAATAAAGTGG
GTGTTTATGCAGTGCGTCAAAACTTAGTTTTATATCATAATTTAATGGCTGCACTTGAGGAAAGACCGTTAGAAATTTTT
TCGCCTGGTGGTGATTACCTGTTGATTTATAATCTTGGAGATGGCGAAGGGGTGTTCTCCAAATGGTTCCTTACATTCTC
AGGTAAAATGGCTTTTATGATTAAAGATCACATCGACAGAAAATTTATAAAACTATTCCAAGTTTTGTAA

Upstream 100 bases:

>100_bases
ATAAAACTGTTCAAAAATAGCAGTTTAATAACCTAGTCACATTGCAATGCTGGATTCACGCATTGAATAATGCATTGAAG
AACGGAAGGAACGAACGGCC

Downstream 100 bases:

>100_bases
TAAGTTAACAGCTTACTCTCGGCATATTATAAAAATAAAATAAGTGAAATAAGCATCATGAAAAAAGTCAGTTTTATTAA
TATTGAAGACGAGGGTATAG

Product: FAD-dependent pyridine nucleotide-disulphide oxidoreductase

Products: NAD; reduced flavorubredoxin; H2O [C]

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 369

Protein sequence:

>369_residues
MKSLVLIGGGHAHMITLSKLDTFISKGYQVTVIQPADYHYYSGMGPGMLGGTYEPDDIRFATKILVESKGGRFVKAHASR
IDPEKRVVHLQESDEKIKYDVLSCNAGSYVPKNIVEGDSDNVFTAKPIEELSRAKETILKKLRDGPISIAVLGGGPAAIE
IAGNIHQLCKQKALHQPHIRLFSGHGLMSKVSPRVRKLLRKLLVRKGIEIIEKGYVEKVANGKITLENDTTYTADIIFPA
IGVKPSTIFSRSGLDIGPEGGLKVNSFLQSTSHTPIFGGGDCIYYADQPLNKVGVYAVRQNLVLYHNLMAALEERPLEIF
SPGGDYLLIYNLGDGEGVFSKWFLTFSGKMAFMIKDHIDRKFIKLFQVL

Sequences:

>Translated_369_residues
MKSLVLIGGGHAHMITLSKLDTFISKGYQVTVIQPADYHYYSGMGPGMLGGTYEPDDIRFATKILVESKGGRFVKAHASR
IDPEKRVVHLQESDEKIKYDVLSCNAGSYVPKNIVEGDSDNVFTAKPIEELSRAKETILKKLRDGPISIAVLGGGPAAIE
IAGNIHQLCKQKALHQPHIRLFSGHGLMSKVSPRVRKLLRKLLVRKGIEIIEKGYVEKVANGKITLENDTTYTADIIFPA
IGVKPSTIFSRSGLDIGPEGGLKVNSFLQSTSHTPIFGGGDCIYYADQPLNKVGVYAVRQNLVLYHNLMAALEERPLEIF
SPGGDYLLIYNLGDGEGVFSKWFLTFSGKMAFMIKDHIDRKFIKLFQVL
>Mature_369_residues
MKSLVLIGGGHAHMITLSKLDTFISKGYQVTVIQPADYHYYSGMGPGMLGGTYEPDDIRFATKILVESKGGRFVKAHASR
IDPEKRVVHLQESDEKIKYDVLSCNAGSYVPKNIVEGDSDNVFTAKPIEELSRAKETILKKLRDGPISIAVLGGGPAAIE
IAGNIHQLCKQKALHQPHIRLFSGHGLMSKVSPRVRKLLRKLLVRKGIEIIEKGYVEKVANGKITLENDTTYTADIIFPA
IGVKPSTIFSRSGLDIGPEGGLKVNSFLQSTSHTPIFGGGDCIYYADQPLNKVGVYAVRQNLVLYHNLMAALEERPLEIF
SPGGDYLLIYNLGDGEGVFSKWFLTFSGKMAFMIKDHIDRKFIKLFQVL

Specific function: Unknown

COG id: COG1252

COG function: function code C; NADH dehydrogenase, FAD-containing subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NADH dehydrogenase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013027
- InterPro:   IPR001327 [H]

Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2 [H]

EC number: NA

Molecular weight: Translated: 40709; Mature: 40709

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSLVLIGGGHAHMITLSKLDTFISKGYQVTVIQPADYHYYSGMGPGMLGGTYEPDDIRF
CCEEEEEECCCEEEEEHHHHHHHHHCCEEEEEEECCCCCEECCCCCCCCCCCCCCCCHHE
ATKILVESKGGRFVKAHASRIDPEKRVVHLQESDEKIKYDVLSCNAGSYVPKNIVEGDSD
EEEEEEECCCCEEEEEHHHHCCHHHEEEEEECCCCEEEEEEEECCCCCCCCCHHCCCCCC
NVFTAKPIEELSRAKETILKKLRDGPISIAVLGGGPAAIEIAGNIHQLCKQKALHQPHIR
CEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCHHHHHHHHHHCCCCCEE
LFSGHGLMSKVSPRVRKLLRKLLVRKGIEIIEKGYVEKVANGKITLENDTTYTADIIFPA
EEECCCCHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEEECCCEEEEEEEEEC
IGVKPSTIFSRSGLDIGPEGGLKVNSFLQSTSHTPIFGGGDCIYYADQPLNKVGVYAVRQ
CCCCCCCEEECCCCCCCCCCCEEHHHHHHCCCCCCEEECCCEEEECCCCCCHHHHHHHHH
NLVLYHNLMAALEERPLEIFSPGGDYLLIYNLGDGEGVFSKWFLTFSGKMAFMIKDHIDR
HHHHHHHHHHHHHHCCEEEECCCCCEEEEEECCCCCCCHHEEEEEECCCEEEEEHHHHHH
KFIKLFQVL
HHHHHHHCC
>Mature Secondary Structure
MKSLVLIGGGHAHMITLSKLDTFISKGYQVTVIQPADYHYYSGMGPGMLGGTYEPDDIRF
CCEEEEEECCCEEEEEHHHHHHHHHCCEEEEEEECCCCCEECCCCCCCCCCCCCCCCHHE
ATKILVESKGGRFVKAHASRIDPEKRVVHLQESDEKIKYDVLSCNAGSYVPKNIVEGDSD
EEEEEEECCCCEEEEEHHHHCCHHHEEEEEECCCCEEEEEEEECCCCCCCCCHHCCCCCC
NVFTAKPIEELSRAKETILKKLRDGPISIAVLGGGPAAIEIAGNIHQLCKQKALHQPHIR
CEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCHHHHHHHHHHCCCCCEE
LFSGHGLMSKVSPRVRKLLRKLLVRKGIEIIEKGYVEKVANGKITLENDTTYTADIIFPA
EEECCCCHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEEECCCEEEEEEEEEC
IGVKPSTIFSRSGLDIGPEGGLKVNSFLQSTSHTPIFGGGDCIYYADQPLNKVGVYAVRQ
CCCCCCCEEECCCCCCCCCCCEEHHHHHHCCCCCCEEECCCEEEECCCCCCHHHHHHHHH
NLVLYHNLMAALEERPLEIFSPGGDYLLIYNLGDGEGVFSKWFLTFSGKMAFMIKDHIDR
HHHHHHHHHHHHHHCCEEEECCCCCEEEEEECCCCCCCHHEEEEEECCCEEEEEHHHHHH
KFIKLFQVL
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NADH; oxidized flavorubredoxin; O2 [C]

Specific reaction: NADH + oxidized flavorubredoxin + O2 = NAD + reduced flavorubredoxin + H2O [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA