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The map label for this gene is yhgF [C]

Identifier: 119945506

GI number: 119945506

Start: 2196030

End: 2198216

Strand: Direct

Name: yhgF [C]

Synonym: Ping_1810

Alternate gene names: 119945506

Gene position: 2196030-2198216 (Clockwise)

Preceding gene: 119945504

Following gene: 119945507

Centisome position: 48.16

GC content: 43.94

Gene sequence:

>2187_bases
ATGAAAACAACGACACCGCCAGTTAGTCAACAGCTTGCAAATGAAGTTAATCTTCCACTTATGCAAGTTAACGCCTTTAT
TACACTCTATGACGATGGTAATACCGTGCCTTTTATTGCCCGTTATCGCAAAGAGGTAACCCAAGGCCTGGATGATATTC
AACTGCGCCTGCTGGAGACGCGCTTAATTTATTTGCGTGAATTAGATATTCGTCGTCAGAGTATTCTGAAAGCCATTGTT
GCATTGGGGAAATTAACCCCGGATTTAAACCTTAAAATTAAGCAGTGTAATAATAAAAGTACACTTGAAGATCTTTATCT
GCCCTATAAGAGTAAACGCGTCAGTAAAGGCGAATTAGCGATTGAAGCGGGTCTTGAACCCCTTGCGGATAAATTGTGGA
TGCAGGCTGATGGTGATGCAAATATTCTAGGCAAGCAGTATATTAACCCAAAAAAAGGGGTTTCTGATATTGAAAGCGTC
TTAGAGGGTGCCCTCTCTATTTGCATGGAACGCATTGTTAACGATCCGCAATTGCTTGGAAAACTGCGTCATTATCTCTC
GGCCAATGCCGCTTTTGAATGCAAAGTAGCGAAGGGTAAAGAAGAGCAAGCGGTTAAATATAAAGACTATTTTGATTATC
AGGAACCTCTGCATAAAATTCCTGCACACCGATTTTTAGCCATCCTGCGTGGTAAAAAAGAGGGGCTGCTTAAACTTGAT
CTAAATGCCGATCCCAAACAGGATAAAAAAACCAAATCATCCTATTGTGAAAGTTTAATCGCCCATCATTTAGGTTTTTC
CTGGTTGCAGTTGCCGGCCAATAATTGGCGCAAAAAAGTGATTCAAAAAGCCTGGAAGGGCAAATTAGCCGGGCAGTTGG
AAACGCAGTTAATCACACGCTTAAAAGATGATGCCCATGAAAATGCCATGGATAATTTTGCGTCTAATTTAAAAGCGCTG
TTAATGGCCGCGCCCGCAGGGCCCAAAGTGACCTTAGGGTTAGATCCTGGCTTGCGCACAGGCTGCAAATTAGCCGTCGT
TGATAGTACCGGTAAGCTACTGGCTTATCAGACTATCTACCCGCATCAACCGGTTAATAAAACCCAACAGGCAGCACAGG
AAATGCTTAAATTAATTAAAGAATTTAAGGTAGAACTGATCGCCATTGGCAATGGTACGGCATCGCGGGAATCCGATGAT
TTTATCCGCGATACCTTAGCGCAGCAGAATCTGGAGGTAAGCACGGTTATCGTCAGTGAAGCCGGCGCATCGGTTTATTC
GGCCTCAGAGCTTGCATCTCTCGAGTTTCCTGATATCGATGTTTCGATTAGAGGAGCGGTTTCCATTGCCCGGCGATTGC
AGGATCCTTTAGCTGAGCTGGTTAAAATAGATGCCAAAGCGATCGGTGTAGGCTTATATCAGCACGACGTTAACCAAAGC
AGTTTAAGCCAGCGTTTGGGCAGTGTGGTCGAAGATTGTGTTAATTCCGTGGGAGTCGATTTAAACAGTGCCTCTGTCTC
TTTACTTGCACGTGTGGCTGGATTGAATCAAACGATTGCTAAAAATATCGTCAGTTATCGTGACCTGAATGGTGCCTTTA
AGTCGCGCCAAGCGCTGCAAAAAGTCTCGCGCTTAGGCGATAAAGCTTATCAGCAAAGTGCCGGGTTTTTACGGATAAAT
AATGCGCTTAATCCCCTTGATAATTCTGCCGTTCATCCTGAAGCTTATAATCTGGTCAAACGTATTGCGGCGCAGGAAGG
GGTTAAAGTGCAGCAGTTATTAAATAATTCAGATTTGTTAAATTCGCTTGATGCACAGAACTATGCCGATCAGACCTTTG
GTGTTATCAGTGTCCGAGAAATTGTTAAAGAGCTTGCCAAGCCTAAACGCGATCCCAGACCGGATTTTCAGCGGGTCGAT
TTTGCAAAAAACATTAATAAAATTTCGGATTTACAGGAAGGTATGCTGCTGCAGGGGGTTATTTCTAATGTGACCAATTT
TGGCGCATTTGTTGATATAGGCGTCCATCAGGATGGACTCGTGCATATCTCCCAACTTGCCGATAATTTTGTCAGTGATC
CCTTCGCCATTGTGAAAGTCGGGCAGTTGGTTAATGTCCGGGTTGTTGAGATTGACGTACAAAGAAAACGCATTGCACTG
AGCATGCGCCTTGCAGTTAAAGCCTGA

Upstream 100 bases:

>100_bases
ATCATGTTATCATCCTAATAGAGGGTCATTAAGCTCAATATAACGCAAAAGATCAGCAGGCCATAATGATGATATAAATA
ACACAACTAAAAAGATAATT

Downstream 100 bases:

>100_bases
TAAAACAGATGAATTATAAGATTAAAATGAGTCGCCGTTTACAACAAATCGACGCTATGATAAGTCAATCTTACCAGCAT
ATTTGGGATTGCTGTTGTGA

Product: RNA-binding S1 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 728; Mature: 728

Protein sequence:

>728_residues
MKTTTPPVSQQLANEVNLPLMQVNAFITLYDDGNTVPFIARYRKEVTQGLDDIQLRLLETRLIYLRELDIRRQSILKAIV
ALGKLTPDLNLKIKQCNNKSTLEDLYLPYKSKRVSKGELAIEAGLEPLADKLWMQADGDANILGKQYINPKKGVSDIESV
LEGALSICMERIVNDPQLLGKLRHYLSANAAFECKVAKGKEEQAVKYKDYFDYQEPLHKIPAHRFLAILRGKKEGLLKLD
LNADPKQDKKTKSSYCESLIAHHLGFSWLQLPANNWRKKVIQKAWKGKLAGQLETQLITRLKDDAHENAMDNFASNLKAL
LMAAPAGPKVTLGLDPGLRTGCKLAVVDSTGKLLAYQTIYPHQPVNKTQQAAQEMLKLIKEFKVELIAIGNGTASRESDD
FIRDTLAQQNLEVSTVIVSEAGASVYSASELASLEFPDIDVSIRGAVSIARRLQDPLAELVKIDAKAIGVGLYQHDVNQS
SLSQRLGSVVEDCVNSVGVDLNSASVSLLARVAGLNQTIAKNIVSYRDLNGAFKSRQALQKVSRLGDKAYQQSAGFLRIN
NALNPLDNSAVHPEAYNLVKRIAAQEGVKVQQLLNNSDLLNSLDAQNYADQTFGVISVREIVKELAKPKRDPRPDFQRVD
FAKNINKISDLQEGMLLQGVISNVTNFGAFVDIGVHQDGLVHISQLADNFVSDPFAIVKVGQLVNVRVVEIDVQRKRIAL
SMRLAVKA

Sequences:

>Translated_728_residues
MKTTTPPVSQQLANEVNLPLMQVNAFITLYDDGNTVPFIARYRKEVTQGLDDIQLRLLETRLIYLRELDIRRQSILKAIV
ALGKLTPDLNLKIKQCNNKSTLEDLYLPYKSKRVSKGELAIEAGLEPLADKLWMQADGDANILGKQYINPKKGVSDIESV
LEGALSICMERIVNDPQLLGKLRHYLSANAAFECKVAKGKEEQAVKYKDYFDYQEPLHKIPAHRFLAILRGKKEGLLKLD
LNADPKQDKKTKSSYCESLIAHHLGFSWLQLPANNWRKKVIQKAWKGKLAGQLETQLITRLKDDAHENAMDNFASNLKAL
LMAAPAGPKVTLGLDPGLRTGCKLAVVDSTGKLLAYQTIYPHQPVNKTQQAAQEMLKLIKEFKVELIAIGNGTASRESDD
FIRDTLAQQNLEVSTVIVSEAGASVYSASELASLEFPDIDVSIRGAVSIARRLQDPLAELVKIDAKAIGVGLYQHDVNQS
SLSQRLGSVVEDCVNSVGVDLNSASVSLLARVAGLNQTIAKNIVSYRDLNGAFKSRQALQKVSRLGDKAYQQSAGFLRIN
NALNPLDNSAVHPEAYNLVKRIAAQEGVKVQQLLNNSDLLNSLDAQNYADQTFGVISVREIVKELAKPKRDPRPDFQRVD
FAKNINKISDLQEGMLLQGVISNVTNFGAFVDIGVHQDGLVHISQLADNFVSDPFAIVKVGQLVNVRVVEIDVQRKRIAL
SMRLAVKA
>Mature_728_residues
MKTTTPPVSQQLANEVNLPLMQVNAFITLYDDGNTVPFIARYRKEVTQGLDDIQLRLLETRLIYLRELDIRRQSILKAIV
ALGKLTPDLNLKIKQCNNKSTLEDLYLPYKSKRVSKGELAIEAGLEPLADKLWMQADGDANILGKQYINPKKGVSDIESV
LEGALSICMERIVNDPQLLGKLRHYLSANAAFECKVAKGKEEQAVKYKDYFDYQEPLHKIPAHRFLAILRGKKEGLLKLD
LNADPKQDKKTKSSYCESLIAHHLGFSWLQLPANNWRKKVIQKAWKGKLAGQLETQLITRLKDDAHENAMDNFASNLKAL
LMAAPAGPKVTLGLDPGLRTGCKLAVVDSTGKLLAYQTIYPHQPVNKTQQAAQEMLKLIKEFKVELIAIGNGTASRESDD
FIRDTLAQQNLEVSTVIVSEAGASVYSASELASLEFPDIDVSIRGAVSIARRLQDPLAELVKIDAKAIGVGLYQHDVNQS
SLSQRLGSVVEDCVNSVGVDLNSASVSLLARVAGLNQTIAKNIVSYRDLNGAFKSRQALQKVSRLGDKAYQQSAGFLRIN
NALNPLDNSAVHPEAYNLVKRIAAQEGVKVQQLLNNSDLLNSLDAQNYADQTFGVISVREIVKELAKPKRDPRPDFQRVD
FAKNINKISDLQEGMLLQGVISNVTNFGAFVDIGVHQDGLVHISQLADNFVSDPFAIVKVGQLVNVRVVEIDVQRKRIAL
SMRLAVKA

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=799, Percent_Identity=32.2903629536921, Blast_Score=358, Evalue=1e-98,
Organism=Homo sapiens, GI27597090, Length=705, Percent_Identity=22.6950354609929, Blast_Score=105, Evalue=1e-22,
Organism=Escherichia coli, GI87082262, Length=714, Percent_Identity=57.4229691876751, Blast_Score=822, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=76, Percent_Identity=42.1052631578947, Blast_Score=70, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17511129, Length=739, Percent_Identity=28.1461434370771, Blast_Score=234, Evalue=1e-61,
Organism=Caenorhabditis elegans, GI17552892, Length=630, Percent_Identity=23.1746031746032, Blast_Score=94, Evalue=3e-19,
Organism=Saccharomyces cerevisiae, GI6321552, Length=191, Percent_Identity=27.2251308900524, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI62484314, Length=753, Percent_Identity=31.4741035856574, Blast_Score=345, Evalue=8e-95,
Organism=Drosophila melanogaster, GI24640080, Length=725, Percent_Identity=20.4137931034483, Blast_Score=84, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003583
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 80481; Mature: 80481

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTTTPPVSQQLANEVNLPLMQVNAFITLYDDGNTVPFIARYRKEVTQGLDDIQLRLLET
CCCCCCCHHHHHHHHCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHH
RLIYLRELDIRRQSILKAIVALGKLTPDLNLKIKQCNNKSTLEDLYLPYKSKRVSKGELA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHCCCHHCCCCCCCCH
IEAGLEPLADKLWMQADGDANILGKQYINPKKGVSDIESVLEGALSICMERIVNDPQLLG
HHHCCHHHHHHHHCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHH
KLRHYLSANAAFECKVAKGKEEQAVKYKDYFDYQEPLHKIPAHRFLAILRGKKEGLLKLD
HHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCHHHHHHHHHCCCCCEEEEE
LNADPKQDKKTKSSYCESLIAHHLGFSWLQLPANNWRKKVIQKAWKGKLAGQLETQLITR
CCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
LKDDAHENAMDNFASNLKALLMAAPAGPKVTLGLDPGLRTGCKLAVVDSTGKLLAYQTIY
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEEECCCCEEEEEEEC
PHQPVNKTQQAAQEMLKLIKEFKVELIAIGNGTASRESDDFIRDTLAQQNLEVSTVIVSE
CCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEEEC
AGASVYSASELASLEFPDIDVSIRGAVSIARRLQDPLAELVKIDAKAIGVGLYQHDVNQS
CCCCHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHCCCHH
SLSQRLGSVVEDCVNSVGVDLNSASVSLLARVAGLNQTIAKNIVSYRDLNGAFKSRQALQ
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHH
KVSRLGDKAYQQSAGFLRINNALNPLDNSAVHPEAYNLVKRIAAQEGVKVQQLLNNSDLL
HHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCHHHH
NSLDAQNYADQTFGVISVREIVKELAKPKRDPRPDFQRVDFAKNINKISDLQEGMLLQGV
HHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ISNVTNFGAFVDIGVHQDGLVHISQLADNFVSDPFAIVKVGQLVNVRVVEIDVQRKRIAL
HHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHCCCCEEEEEEEEHHHHHHHH
SMRLAVKA
HHHHEECC
>Mature Secondary Structure
MKTTTPPVSQQLANEVNLPLMQVNAFITLYDDGNTVPFIARYRKEVTQGLDDIQLRLLET
CCCCCCCHHHHHHHHCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHH
RLIYLRELDIRRQSILKAIVALGKLTPDLNLKIKQCNNKSTLEDLYLPYKSKRVSKGELA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHCCCHHCCCCCCCCH
IEAGLEPLADKLWMQADGDANILGKQYINPKKGVSDIESVLEGALSICMERIVNDPQLLG
HHHCCHHHHHHHHCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHH
KLRHYLSANAAFECKVAKGKEEQAVKYKDYFDYQEPLHKIPAHRFLAILRGKKEGLLKLD
HHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCHHHHHHHHHCCCCCEEEEE
LNADPKQDKKTKSSYCESLIAHHLGFSWLQLPANNWRKKVIQKAWKGKLAGQLETQLITR
CCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
LKDDAHENAMDNFASNLKALLMAAPAGPKVTLGLDPGLRTGCKLAVVDSTGKLLAYQTIY
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEEECCCCEEEEEEEC
PHQPVNKTQQAAQEMLKLIKEFKVELIAIGNGTASRESDDFIRDTLAQQNLEVSTVIVSE
CCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEEEC
AGASVYSASELASLEFPDIDVSIRGAVSIARRLQDPLAELVKIDAKAIGVGLYQHDVNQS
CCCCHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHCCCHH
SLSQRLGSVVEDCVNSVGVDLNSASVSLLARVAGLNQTIAKNIVSYRDLNGAFKSRQALQ
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHH
KVSRLGDKAYQQSAGFLRINNALNPLDNSAVHPEAYNLVKRIAAQEGVKVQQLLNNSDLL
HHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCHHHH
NSLDAQNYADQTFGVISVREIVKELAKPKRDPRPDFQRVDFAKNINKISDLQEGMLLQGV
HHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ISNVTNFGAFVDIGVHQDGLVHISQLADNFVSDPFAIVKVGQLVNVRVVEIDVQRKRIAL
HHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHCCCCEEEEEEEEHHHHHHHH
SMRLAVKA
HHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]