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The map label for this gene is ygdD [C]

Identifier: 119945328

GI number: 119945328

Start: 1965926

End: 1966339

Strand: Direct

Name: ygdD [C]

Synonym: Ping_1612

Alternate gene names: 119945328

Gene position: 1965926-1966339 (Clockwise)

Preceding gene: 119945327

Following gene: 119945329

Centisome position: 43.12

GC content: 38.65

Gene sequence:

>414_bases
ATGCTTAAACAACCAATAAAATTGACTGAAACAACGCGCTTTTTTTTAATTCTGGCCTCTTTATTAGGGGCTTCGGGCGT
TGCATTAGGGGCTTATGCCAGTCATGGTCTGTCGGCTTGGGCGACGGTAAAAGAGATTGAATATTTTCAATTAGCCGTCA
CTTATCAACTATTTCATGCGATCACTTTATTAGCAGTTTGTCTGTTATCCCTTTTTATCACTAACGCTTTTTTAATCGCG
AGTAAAATCGCTTTTGTACTGGGGGTAGTTTTATTTAGTGGTAGTCTGTATCTGTATGTTTTGACCGGGACAAAAATATT
GGGGGCGATTACGCCAATAGGTGGTTTGTGCTTAATTGTTGCATGGCTTTTAATTGCTCTAGCTTTATTAAGCCATAGAA
ATAACACCAAGTAA

Upstream 100 bases:

>100_bases
GTCCTTGCGCGTTACCATTACATCAATTAAAAGCCTTCCTTTCTCAAATGAAGCAGATGGATGAGTTAGCCAAAAGTTTT
GATATTATTGATACTGAATA

Downstream 100 bases:

>100_bases
CCTAAGCTTGGGATAAGAAAAACAATACAATACTGTTATTTTCGCGTATTTCTGTGTTAAATCATCTTTCAATAGCCCAC
TATTGTGTTGATAATTTGCC

Product: membrane protein DUF423

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:

>137_residues
MLKQPIKLTETTRFFLILASLLGASGVALGAYASHGLSAWATVKEIEYFQLAVTYQLFHAITLLAVCLLSLFITNAFLIA
SKIAFVLGVVLFSGSLYLYVLTGTKILGAITPIGGLCLIVAWLLIALALLSHRNNTK

Sequences:

>Translated_137_residues
MLKQPIKLTETTRFFLILASLLGASGVALGAYASHGLSAWATVKEIEYFQLAVTYQLFHAITLLAVCLLSLFITNAFLIA
SKIAFVLGVVLFSGSLYLYVLTGTKILGAITPIGGLCLIVAWLLIALALLSHRNNTK
>Mature_137_residues
MLKQPIKLTETTRFFLILASLLGASGVALGAYASHGLSAWATVKEIEYFQLAVTYQLFHAITLLAVCLLSLFITNAFLIA
SKIAFVLGVVLFSGSLYLYVLTGTKILGAITPIGGLCLIVAWLLIALALLSHRNNTK

Specific function: Unknown

COG id: COG2363

COG function: function code S; Uncharacterized small membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0382 family [H]

Homologues:

Organism=Escherichia coli, GI1789172, Length=115, Percent_Identity=34.7826086956522, Blast_Score=67, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI193203406, Length=108, Percent_Identity=37.962962962963, Blast_Score=65, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006696 [H]

Pfam domain/function: PF04241 DUF423 [H]

EC number: NA

Molecular weight: Translated: 14729; Mature: 14729

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKQPIKLTETTRFFLILASLLGASGVALGAYASHGLSAWATVKEIEYFQLAVTYQLFHA
CCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
ITLLAVCLLSLFITNAFLIASKIAFVLGVVLFSGSLYLYVLTGTKILGAITPIGGLCLIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHCCHHHHHHHH
AWLLIALALLSHRNNTK
HHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MLKQPIKLTETTRFFLILASLLGASGVALGAYASHGLSAWATVKEIEYFQLAVTYQLFHA
CCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
ITLLAVCLLSLFITNAFLIASKIAFVLGVVLFSGSLYLYVLTGTKILGAITPIGGLCLIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHCCHHHHHHHH
AWLLIALALLSHRNNTK
HHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA