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The map label for this gene is ybeQ [H]

Identifier: 119945229

GI number: 119945229

Start: 1842789

End: 1843370

Strand: Direct

Name: ybeQ [H]

Synonym: Ping_1495

Alternate gene names: 119945229

Gene position: 1842789-1843370 (Clockwise)

Preceding gene: 119945228

Following gene: 119945230

Centisome position: 40.42

GC content: 47.77

Gene sequence:

>582_bases
ATGAACAAACCTATTTTTTTTGTGTTGCTTTGTCTGTGTATCTCCTTTGCTGAGAGCGGAGAGCAGGTAAAAATCGATAC
CCTGTCTGCTGAATATGGCGATGCCGCTTCACAACACAATCTTGGGGTTATGTATATGATGGGGAATGGCATACCCCAAA
GCTATCCGCTAGCTTTAAAGTGGTTTAGTAAAGCTGCTAAGCAGGGGCTTGCTAGTGCTCAAGTCAATCTCGGCAGTATG
TACAAGGAGTCTCTCGGGGTCACACAAAACAATGCAGAGGCCTTTATATGGTATCAAAAAGCCGCGCTGCAGGGGCATGC
GGCTGGTCAAAATAACCTTGCACTGATGTACATGCTCGGTCTTGGTGTAACGCCTAATCCAATTGAGGCGAGCAGATGGT
GGCTTAAAGCGGCACAGCAAGGACATGTCAGTGCGCAACTCAGCCTTGGTACACTTTATGAGCTTGGCTTAGGTGTACCA
AAAAACAGCGACGAAGCTATAAAATGGTGGCGCAAGGCTGCGATGCAGGGTGATAGCAGTGCCAAAAAGCAACTCAGCAG
TGTGGGGGGCGTTACTAAATAA

Upstream 100 bases:

>100_bases
GGTAAGCAGAGCCACTTAACAAGTGCATAAAGATTAACAAACTTAATTTTGTTTATTATAAATATGTAAGGTCATTAAAA
GAAGCTAAGGGGGAAAAATA

Downstream 100 bases:

>100_bases
GGCACATTGAGCCAATATATATACCCATGATACTTCAAGATGTAAAGTCAGCAAGGAAAATTGTGCTGAGATGCTAGGCA
TAAAATTGAAGTATAGTTAT

Product: TPR repeat- and Sel1 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MNKPIFFVLLCLCISFAESGEQVKIDTLSAEYGDAASQHNLGVMYMMGNGIPQSYPLALKWFSKAAKQGLASAQVNLGSM
YKESLGVTQNNAEAFIWYQKAALQGHAAGQNNLALMYMLGLGVTPNPIEASRWWLKAAQQGHVSAQLSLGTLYELGLGVP
KNSDEAIKWWRKAAMQGDSSAKKQLSSVGGVTK

Sequences:

>Translated_193_residues
MNKPIFFVLLCLCISFAESGEQVKIDTLSAEYGDAASQHNLGVMYMMGNGIPQSYPLALKWFSKAAKQGLASAQVNLGSM
YKESLGVTQNNAEAFIWYQKAALQGHAAGQNNLALMYMLGLGVTPNPIEASRWWLKAAQQGHVSAQLSLGTLYELGLGVP
KNSDEAIKWWRKAAMQGDSSAKKQLSSVGGVTK
>Mature_193_residues
MNKPIFFVLLCLCISFAESGEQVKIDTLSAEYGDAASQHNLGVMYMMGNGIPQSYPLALKWFSKAAKQGLASAQVNLGSM
YKESLGVTQNNAEAFIWYQKAALQGHAAGQNNLALMYMLGLGVTPNPIEASRWWLKAAQQGHVSAQLSLGTLYELGLGVP
KNSDEAIKWWRKAAMQGDSSAKKQLSSVGGVTK

Specific function: Unknown

COG id: COG0790

COG function: function code R; FOG: TPR repeat, SEL1 subfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybeT [H]

Homologues:

Organism=Homo sapiens, GI151301150, Length=150, Percent_Identity=41.3333333333333, Blast_Score=94, Evalue=5e-20,
Organism=Homo sapiens, GI19923669, Length=150, Percent_Identity=38, Blast_Score=91, Evalue=5e-19,
Organism=Escherichia coli, GI87081769, Length=154, Percent_Identity=42.2077922077922, Blast_Score=117, Evalue=4e-28,
Organism=Escherichia coli, GI1786867, Length=126, Percent_Identity=37.3015873015873, Blast_Score=80, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI17563256, Length=154, Percent_Identity=29.8701298701299, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21355295, Length=156, Percent_Identity=32.0512820512821, Blast_Score=72, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006597
- InterPro:   IPR011990 [H]

Pfam domain/function: PF08238 Sel1 [H]

EC number: NA

Molecular weight: Translated: 20847; Mature: 20847

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKPIFFVLLCLCISFAESGEQVKIDTLSAEYGDAASQHNLGVMYMMGNGIPQSYPLALK
CCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCHHHH
WFSKAAKQGLASAQVNLGSMYKESLGVTQNNAEAFIWYQKAALQGHAAGQNNLALMYMLG
HHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHCCCCCCCCCEEEEEEEC
LGVTPNPIEASRWWLKAAQQGHVSAQLSLGTLYELGLGVPKNSDEAIKWWRKAAMQGDSS
CCCCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHH
AKKQLSSVGGVTK
HHHHHHHHCCCCC
>Mature Secondary Structure
MNKPIFFVLLCLCISFAESGEQVKIDTLSAEYGDAASQHNLGVMYMMGNGIPQSYPLALK
CCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCHHHH
WFSKAAKQGLASAQVNLGSMYKESLGVTQNNAEAFIWYQKAALQGHAAGQNNLALMYMLG
HHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHCCCCCCCCCEEEEEEEC
LGVTPNPIEASRWWLKAAQQGHVSAQLSLGTLYELGLGVPKNSDEAIKWWRKAAMQGDSS
CCCCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHH
AKKQLSSVGGVTK
HHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]