| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is 119945161
Identifier: 119945161
GI number: 119945161
Start: 1750718
End: 1751536
Strand: Reverse
Name: 119945161
Synonym: Ping_1425
Alternate gene names: NA
Gene position: 1751536-1750718 (Counterclockwise)
Preceding gene: 119945162
Following gene: 119945160
Centisome position: 38.41
GC content: 41.64
Gene sequence:
>819_bases ATGAGTCCTATCTGGGCGGTGGCATTAAAAGAGTTTCAAGATGGCGTACGTAACCGTTGGTTTATTTCAATCACCTGCAT TTTTGCTCTGTTATCTATTGGCTTAAGTTATTACGGCTCAGTGGCATCGGGGCAAATTACCCCGCCTTCGTTATCCACTA CTATTGCGAGCTTATCCAGCTTGTCAGTGTTTATTATTCCTCTGATCGCATTATTACTTTGCTATGACAGCTTTGTGGGT GAGCAGGAATCCGGCACTTTACTGTTACTGCTGACTTACCCTGTTAGTCATACTCAGCTGCTGCTGGGTAAATTTATCGG TCAAGGCAGCATTATTACGCTGGCAACTATTATAGGTTTTGGCAGTGCCGCTATTTTGTTAGGTTTTAATACCGACTTTG CAACGGTATTACCCACCTTTGCATTGTTTATTTTAACGGCTAGTTTGCTCGGTCTTAGTTTTATTGGGTTAGCTTATATT ATCAGTTTATCAGTAACAGAAAAGTCTAAAGCGGCAGGTATGGCACTGATCCTGTGGCTGTTTTTTGTATTGATTTTTGA TCTGGGATTATTAGCGATTTTAATCGGTGTTAAGGATGGGGTCTCGCAGCAGGGACTAGTGCAGTTGATGCTCTTTAATC CGGCTGATTTATTTCGCCTGATTAACCTTGCAGCATTGGACAGCGGGGATGTTAACGGGGTATTGGCCGTTGCTATTAAC AGTGACTATTCAGTATCAAGTTTGTTATTGATGATGCTGGCCTGGGTTGTTTCACCCCTGTTATTTGCGCTGTTTATTTT CAGTAAAAAAAGTATTTAA
Upstream 100 bases:
>100_bases TGACCTTTGAAAAATTGACAGATCTGCAGGTTGAAACACCTACCTTAGCGCAAATATATCAATACTTTCTGGGCAACAGT GTACAGCAGGAGAAACCCTT
Downstream 100 bases:
>100_bases TATGTTTGTGTTGATGATTCAGATATGTGTAAACTTTTTTGGAACTGAGCCTTTAGGCTCGGCGGGATTCCGATTCGGAC GGTCTGATACCACATCGGTT
Product: ABC-2 type transporter for copper permease protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 272; Mature: 271
Protein sequence:
>272_residues MSPIWAVALKEFQDGVRNRWFISITCIFALLSIGLSYYGSVASGQITPPSLSTTIASLSSLSVFIIPLIALLLCYDSFVG EQESGTLLLLLTYPVSHTQLLLGKFIGQGSIITLATIIGFGSAAILLGFNTDFATVLPTFALFILTASLLGLSFIGLAYI ISLSVTEKSKAAGMALILWLFFVLIFDLGLLAILIGVKDGVSQQGLVQLMLFNPADLFRLINLAALDSGDVNGVLAVAIN SDYSVSSLLLMMLAWVVSPLLFALFIFSKKSI
Sequences:
>Translated_272_residues MSPIWAVALKEFQDGVRNRWFISITCIFALLSIGLSYYGSVASGQITPPSLSTTIASLSSLSVFIIPLIALLLCYDSFVG EQESGTLLLLLTYPVSHTQLLLGKFIGQGSIITLATIIGFGSAAILLGFNTDFATVLPTFALFILTASLLGLSFIGLAYI ISLSVTEKSKAAGMALILWLFFVLIFDLGLLAILIGVKDGVSQQGLVQLMLFNPADLFRLINLAALDSGDVNGVLAVAIN SDYSVSSLLLMMLAWVVSPLLFALFIFSKKSI >Mature_271_residues SPIWAVALKEFQDGVRNRWFISITCIFALLSIGLSYYGSVASGQITPPSLSTTIASLSSLSVFIIPLIALLLCYDSFVGE QESGTLLLLLTYPVSHTQLLLGKFIGQGSIITLATIIGFGSAAILLGFNTDFATVLPTFALFILTASLLGLSFIGLAYII SLSVTEKSKAAGMALILWLFFVLIFDLGLLAILIGVKDGVSQQGLVQLMLFNPADLFRLINLAALDSGDVNGVLAVAINS DYSVSSLLLMMLAWVVSPLLFALFIFSKKSI
Specific function: Involved in copper processing [H]
COG id: COG1277
COG function: function code R; ABC-type transport system involved in multi-copper enzyme maturation, permease component
Gene ontology:
Cell location: Membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29059; Mature: 28928
Theoretical pI: Translated: 4.72; Mature: 4.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPIWAVALKEFQDGVRNRWFISITCIFALLSIGLSYYGSVASGQITPPSLSTTIASLSS CCCHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH LSVFIIPLIALLLCYDSFVGEQESGTLLLLLTYPVSHTQLLLGKFIGQGSIITLATIIGF HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHC GSAAILLGFNTDFATVLPTFALFILTASLLGLSFIGLAYIISLSVTEKSKAAGMALILWL CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH FFVLIFDLGLLAILIGVKDGVSQQGLVQLMLFNPADLFRLINLAALDSGDVNGVLAVAIN HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHCCCCCCCCEEEEEEC SDYSVSSLLLMMLAWVVSPLLFALFIFSKKSI CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SPIWAVALKEFQDGVRNRWFISITCIFALLSIGLSYYGSVASGQITPPSLSTTIASLSS CCHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH LSVFIIPLIALLLCYDSFVGEQESGTLLLLLTYPVSHTQLLLGKFIGQGSIITLATIIGF HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHC GSAAILLGFNTDFATVLPTFALFILTASLLGLSFIGLAYIISLSVTEKSKAAGMALILWL CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH FFVLIFDLGLLAILIGVKDGVSQQGLVQLMLFNPADLFRLINLAALDSGDVNGVLAVAIN HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHCCCCCCCCEEEEEEC SDYSVSSLLLMMLAWVVSPLLFALFIFSKKSI CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 2170125 [H]