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The map label for this gene is qseB [H]

Identifier: 119944977

GI number: 119944977

Start: 1529371

End: 1530027

Strand: Direct

Name: qseB [H]

Synonym: Ping_1228

Alternate gene names: 119944977

Gene position: 1529371-1530027 (Clockwise)

Preceding gene: 119944975

Following gene: 119944978

Centisome position: 33.54

GC content: 38.51

Gene sequence:

>657_bases
ATGCGTATTTTATTAGTTGAAGATGATGTTATGTTAGGCGAATCCATGGTGGTTTCATTAATTCGTCATGGATACACAGT
CGATTGGCTGCAATTGGGCGCTGCGGTAGAGATGACTTTAAGAACTGAAAATTTTACGGCGATAATCTTAGATTTAACAC
TGCCGGATGCCGACGGTTTAGATATCCTGAGTCAAGTCAGGAAAGCGGGACATAAACTGCCAATCTTAATTTTAACTGCG
CGAGATGATATTGATGACAGAGTTAAAGGTCTTGATGGTGGGGCAGATGATTATTTGCTGAAACCTTTTGCTTTACAAGA
ACTGCTGGCGCGTTTACGGGTTATTGTCAGACGGGTATCGGGTTATGCTGAATCAAAGATTGAACTGCATGGCTTGGTTA
TCTCTTTGGCAAAAAACACCGTTGAGTATCATGGTGCTGCTATAAAATTAACCAATACTGAATTTAAATTACTGACAACC
TTAGTGACCAAAGCAGGTCGAGTATTAAGTAAAGAATATTTACAGCAAACTTTATATGGCTGGGATGAGATGGCGAGCGA
TAACGCGATTGAAGTCTATATACATAATTTACGTAAGAAGATTAACAACCAATTAATTAAAAATATCAGAGGGGTTGGGT
ACATCATTGAAAAATAA

Upstream 100 bases:

>100_bases
TCCCGCTCAAGGGGGAAATTGTAATATACTTAAGCATTCTAAATACGGGGTGGTTTGCTTAATCGCTTGCAGCAAATGGA
ATTAAAGGAATAGATGATTA

Downstream 100 bases:

>100_bases
TATAACCACAGTAATCTCTATTCAAAAACGATTAATAGTATCAACGGTCAGCGTTGCAACCCTGTTAATTTTTACTTCAT
GGATTTTTGTCTTTCATGAA

Product: two component transcriptional regulator, winged helix family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MRILLVEDDVMLGESMVVSLIRHGYTVDWLQLGAAVEMTLRTENFTAIILDLTLPDADGLDILSQVRKAGHKLPILILTA
RDDIDDRVKGLDGGADDYLLKPFALQELLARLRVIVRRVSGYAESKIELHGLVISLAKNTVEYHGAAIKLTNTEFKLLTT
LVTKAGRVLSKEYLQQTLYGWDEMASDNAIEVYIHNLRKKINNQLIKNIRGVGYIIEK

Sequences:

>Translated_218_residues
MRILLVEDDVMLGESMVVSLIRHGYTVDWLQLGAAVEMTLRTENFTAIILDLTLPDADGLDILSQVRKAGHKLPILILTA
RDDIDDRVKGLDGGADDYLLKPFALQELLARLRVIVRRVSGYAESKIELHGLVISLAKNTVEYHGAAIKLTNTEFKLLTT
LVTKAGRVLSKEYLQQTLYGWDEMASDNAIEVYIHNLRKKINNQLIKNIRGVGYIIEK
>Mature_218_residues
MRILLVEDDVMLGESMVVSLIRHGYTVDWLQLGAAVEMTLRTENFTAIILDLTLPDADGLDILSQVRKAGHKLPILILTA
RDDIDDRVKGLDGGADDYLLKPFALQELLARLRVIVRRVSGYAESKIELHGLVISLAKNTVEYHGAAIKLTNTEFKLLTT
LVTKAGRVLSKEYLQQTLYGWDEMASDNAIEVYIHNLRKKINNQLIKNIRGVGYIIEK

Specific function: Member of a two-component regulatory system qseB/qseC [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=216, Percent_Identity=43.0555555555556, Blast_Score=193, Evalue=7e-51,
Organism=Escherichia coli, GI1790552, Length=216, Percent_Identity=41.2037037037037, Blast_Score=184, Evalue=6e-48,
Organism=Escherichia coli, GI1786784, Length=222, Percent_Identity=39.6396396396396, Blast_Score=149, Evalue=1e-37,
Organism=Escherichia coli, GI87082012, Length=218, Percent_Identity=37.1559633027523, Blast_Score=140, Evalue=9e-35,
Organism=Escherichia coli, GI1787375, Length=221, Percent_Identity=36.6515837104072, Blast_Score=139, Evalue=1e-34,
Organism=Escherichia coli, GI1786599, Length=221, Percent_Identity=33.4841628959276, Blast_Score=124, Evalue=4e-30,
Organism=Escherichia coli, GI1788394, Length=220, Percent_Identity=34.0909090909091, Blast_Score=120, Evalue=5e-29,
Organism=Escherichia coli, GI1790860, Length=219, Percent_Identity=32.8767123287671, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI2367329, Length=177, Percent_Identity=37.8531073446328, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1789809, Length=227, Percent_Identity=30.8370044052863, Blast_Score=112, Evalue=1e-26,
Organism=Escherichia coli, GI1786911, Length=222, Percent_Identity=31.5315315315315, Blast_Score=109, Evalue=1e-25,
Organism=Escherichia coli, GI1787229, Length=222, Percent_Identity=30.1801801801802, Blast_Score=107, Evalue=5e-25,
Organism=Escherichia coli, GI1790863, Length=226, Percent_Identity=26.9911504424779, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI145693140, Length=231, Percent_Identity=29.4372294372294, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790299, Length=133, Percent_Identity=30.8270676691729, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 24484; Mature: 24484

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00217 SUGAR_TRANSPORT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILLVEDDVMLGESMVVSLIRHGYTVDWLQLGAAVEMTLRTENFTAIILDLTLPDADGL
CEEEEECCCHHHHHHHHHHHHHCCCEEHHHHHCCEEEEEEEECCEEEEEEEEECCCCCCH
DILSQVRKAGHKLPILILTARDDIDDRVKGLDGGADDYLLKPFALQELLARLRVIVRRVS
HHHHHHHHCCCCCCEEEEEECCCHHHHHHCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHH
GYAESKIELHGLVISLAKNTVEYHGAAIKLTNTEFKLLTTLVTKAGRVLSKEYLQQTLYG
CCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHC
WDEMASDNAIEVYIHNLRKKINNQLIKNIRGVGYIIEK
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
>Mature Secondary Structure
MRILLVEDDVMLGESMVVSLIRHGYTVDWLQLGAAVEMTLRTENFTAIILDLTLPDADGL
CEEEEECCCHHHHHHHHHHHHHCCCEEHHHHHCCEEEEEEEECCEEEEEEEEECCCCCCH
DILSQVRKAGHKLPILILTARDDIDDRVKGLDGGADDYLLKPFALQELLARLRVIVRRVS
HHHHHHHHCCCCCCEEEEEECCCHHHHHHCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHH
GYAESKIELHGLVISLAKNTVEYHGAAIKLTNTEFKLLTTLVTKAGRVLSKEYLQQTLYG
CCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHC
WDEMASDNAIEVYIHNLRKKINNQLIKNIRGVGYIIEK
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]