| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is hypF [H]
Identifier: 119944969
GI number: 119944969
Start: 1521625
End: 1523913
Strand: Direct
Name: hypF [H]
Synonym: Ping_1218
Alternate gene names: 119944969
Gene position: 1521625-1523913 (Clockwise)
Preceding gene: 119944955
Following gene: 119944970
Centisome position: 33.37
GC content: 44.87
Gene sequence:
>2289_bases GTGCAACAGCGATATCAGATAAGTGTTCAGGGCCGGGTGCAAGGGGTCGGTTTCAGGCCTTTTGTAGCAGTGACTGCTGC TAATCTTAATCTGACTGGTTGGGTGCGTAATATCAGGCAGTCGGTATTAATTGAGATACAGGGTGAACCTTTCGAAACAC AAAAATTTTTGCAGCAACTGCAGTCAAAAGCGCCGGCACTGGCAAAGATTGAGCAGCTTAATCACCAACAAATAGACAAC AACGATCAGACTGGCTTCCATATTTTAGAAAGCAGCGGAAAAAATGAGGGGGTGGTGAGTATTTCGCCGGACATCGGAAT TTGTGAACACTGTCAAAAAGAGCTTTTTTACGAGGAGAATAGACGCTATCGCTACCCCTTTATCAGTTGCACCCAATGCG GTCCACGCTACAGTATTCTCCAAAAGTTACCTTTTGATCGCTGTCATACCACCTTAAATGCTTTTCCAATGTGCGAGGAT TGTTTAGCCGAGTATAAAAATCTAAAGGACAGGCGTTTTCATGCTCAGGGAATTAACTGCGCAAAATGTGGTCCGCAGGT CAGTTTTATTAATCATAAAGGGGAAAGAATTGCTGAAAAAGAAGCGGCATTAACCCTTGCTATTAATGCTCTGCAGGCGG GTAAAATACTTGCGGTAAAAGGATTAACTGGCTTTCATATTATGGTTGATGCCTGCAATCACCAAGCCGTTTTACGGCTG CGGGCGAGAAAGCAACGTCCTGAAAAACCTTTTGCGCTTATGTACCCACAATTATCTATGGTCAAGTCCGATTGTCTCCT AGGGGAGCAGGAAAAGTTACTGCTCTGCAGTGCGATTGCACCTATTGTACTGCTGGAAAATAAACACAGTAATCTCTCGC TCAGCCCTGCTATTGCGCCGAATAATCCTTATCTTGGTGTTATGTTAGCTTATACCCCATTGCATCAGCTTATCTGCCGG GCGATTAATAAACCGCTGGTGGTGACCAGTGCCAATCGCAGTGGCGAGCCAGTTTGTTGCGATAATGAGCAGGCATTAGA GCAGCTAAGCCAGCTGGTGGATGGATTTGTAATGCACGATCGGGAAATCTACCAGGGATTAGATGATTCCATTGTGAAAT TTGTTAACCATGAGCCGATGCTGTTAAGGCGTGCACGGGGATATGTACCTGATTATTTGACCTTGGATACTGAGTACCCC TCGATAGTGGCGCTGGGCGGGCAATTAAAAAACAGCATCGCCATAAGCAAAGGTAAACGGCTTTATTTAAGCCAGTATAT TGGCTCACTTGATAATATCGCGTCGGTCAATCGCCATCAAAGAACCCAAAAAATAATGAGCCGTTTAATGGGCGTGACGG CCGATTGTGTTGCCTGTGATCTGCATCCTGATTACGTGACCACGCAATTGGCCAAAAAACAGCATCTGCCTATTATTAGC ACGCAGCATCATTTGGCACATCTTTATGCGGCGATGCTCGAGCATCAGATAATTGATCAGGCATTTGCTGTAGTTTGGGA TGGCAACGGTTATGGCGAAGATGGCACCTTATGGGGAGGTGAATTTATAGCTGTCACGGCCGATAAGCCGCAAAGAGTGG CTACTTTTTTACCTTTTAAATTGCCCGGTGGGGCGGCTGCGATTAAAGAGCCAAGGCGGGTGGCTGTGGCACTTTTATAT GAAGTTTATGGTAAAAAGATTGCCTCGAACGAAGTGCTTAAGTCATTATCCCCCTTTGAATTATCAACCATCAAGCAGCT TTTAAAAATGATCTCTAATAATATCAACAGCCCGTTAACCAGCAGTGCAGGGCGCTTATTTGATGGTATTTCCAGCTTAT TGAATTTAGGTCAGATCAGCAGTTTTGAAGGGGAAGCTGCAATGCGCCTGGAATTTGCGGCAAAAACCTCAAAGGACAAG GGCAGCTATCCAGTGCCCGTTGATTTTGCCGTGACCCCTAATATTATCGACTGGCGGCCTATGCTTGCAGCGATCATTAC TGATATCGGTAACCATGTTTCATCCGCTATTATTGCCAGGCGTTTTCACAACAGCGCCGCCATTATTATTTTGAAAATAG CACAGCATTATGGCGTTACACAAATATTATTAACCGGGGGATGTTTTCAAAATTCTCTGCTTATTGAAATAACCTTCGCG CTTTTGCAGGAACAGGGAATAGCGGTTTTGTGGCATAAAAAGTTACCTGCTAATGATGCCAGCCTCTGTGTGGGGCAGAT AATGGGAGCTTATAAAGCTCGGCATAGCTATTTAAACAAAAAACAGTAG
Upstream 100 bases:
>100_bases TAATGTTAAGAGCCGCATTAATTAGTCGATAAGTGAATAACTTCCGCTGCTCATTATTTTATTTTCCTCAATATTCTCTA AAATTCAGCAAGGTGTGCCT
Downstream 100 bases:
>100_bases CACTGTTATTACACCTGAAAATGCCATTCAATCGCTTAATTAACCAGGCTAAATATCTGTGTACTGGCGGGAGATATACG ACACTTTGAGTCAATGAAAT
Product: (NiFe) hydrogenase maturation protein HypF
Products: NA
Alternate protein names: Carbamoyl phosphate-converting enzyme hypF; [NiFe]-hydrogenase maturation factor hypF; Hydrogenase maturation protein hypF [H]
Number of amino acids: Translated: 762; Mature: 762
Protein sequence:
>762_residues MQQRYQISVQGRVQGVGFRPFVAVTAANLNLTGWVRNIRQSVLIEIQGEPFETQKFLQQLQSKAPALAKIEQLNHQQIDN NDQTGFHILESSGKNEGVVSISPDIGICEHCQKELFYEENRRYRYPFISCTQCGPRYSILQKLPFDRCHTTLNAFPMCED CLAEYKNLKDRRFHAQGINCAKCGPQVSFINHKGERIAEKEAALTLAINALQAGKILAVKGLTGFHIMVDACNHQAVLRL RARKQRPEKPFALMYPQLSMVKSDCLLGEQEKLLLCSAIAPIVLLENKHSNLSLSPAIAPNNPYLGVMLAYTPLHQLICR AINKPLVVTSANRSGEPVCCDNEQALEQLSQLVDGFVMHDREIYQGLDDSIVKFVNHEPMLLRRARGYVPDYLTLDTEYP SIVALGGQLKNSIAISKGKRLYLSQYIGSLDNIASVNRHQRTQKIMSRLMGVTADCVACDLHPDYVTTQLAKKQHLPIIS TQHHLAHLYAAMLEHQIIDQAFAVVWDGNGYGEDGTLWGGEFIAVTADKPQRVATFLPFKLPGGAAAIKEPRRVAVALLY EVYGKKIASNEVLKSLSPFELSTIKQLLKMISNNINSPLTSSAGRLFDGISSLLNLGQISSFEGEAAMRLEFAAKTSKDK GSYPVPVDFAVTPNIIDWRPMLAAIITDIGNHVSSAIIARRFHNSAAIIILKIAQHYGVTQILLTGGCFQNSLLIEITFA LLQEQGIAVLWHKKLPANDASLCVGQIMGAYKARHSYLNKKQ
Sequences:
>Translated_762_residues MQQRYQISVQGRVQGVGFRPFVAVTAANLNLTGWVRNIRQSVLIEIQGEPFETQKFLQQLQSKAPALAKIEQLNHQQIDN NDQTGFHILESSGKNEGVVSISPDIGICEHCQKELFYEENRRYRYPFISCTQCGPRYSILQKLPFDRCHTTLNAFPMCED CLAEYKNLKDRRFHAQGINCAKCGPQVSFINHKGERIAEKEAALTLAINALQAGKILAVKGLTGFHIMVDACNHQAVLRL RARKQRPEKPFALMYPQLSMVKSDCLLGEQEKLLLCSAIAPIVLLENKHSNLSLSPAIAPNNPYLGVMLAYTPLHQLICR AINKPLVVTSANRSGEPVCCDNEQALEQLSQLVDGFVMHDREIYQGLDDSIVKFVNHEPMLLRRARGYVPDYLTLDTEYP SIVALGGQLKNSIAISKGKRLYLSQYIGSLDNIASVNRHQRTQKIMSRLMGVTADCVACDLHPDYVTTQLAKKQHLPIIS TQHHLAHLYAAMLEHQIIDQAFAVVWDGNGYGEDGTLWGGEFIAVTADKPQRVATFLPFKLPGGAAAIKEPRRVAVALLY EVYGKKIASNEVLKSLSPFELSTIKQLLKMISNNINSPLTSSAGRLFDGISSLLNLGQISSFEGEAAMRLEFAAKTSKDK GSYPVPVDFAVTPNIIDWRPMLAAIITDIGNHVSSAIIARRFHNSAAIIILKIAQHYGVTQILLTGGCFQNSLLIEITFA LLQEQGIAVLWHKKLPANDASLCVGQIMGAYKARHSYLNKKQ >Mature_762_residues MQQRYQISVQGRVQGVGFRPFVAVTAANLNLTGWVRNIRQSVLIEIQGEPFETQKFLQQLQSKAPALAKIEQLNHQQIDN NDQTGFHILESSGKNEGVVSISPDIGICEHCQKELFYEENRRYRYPFISCTQCGPRYSILQKLPFDRCHTTLNAFPMCED CLAEYKNLKDRRFHAQGINCAKCGPQVSFINHKGERIAEKEAALTLAINALQAGKILAVKGLTGFHIMVDACNHQAVLRL RARKQRPEKPFALMYPQLSMVKSDCLLGEQEKLLLCSAIAPIVLLENKHSNLSLSPAIAPNNPYLGVMLAYTPLHQLICR AINKPLVVTSANRSGEPVCCDNEQALEQLSQLVDGFVMHDREIYQGLDDSIVKFVNHEPMLLRRARGYVPDYLTLDTEYP SIVALGGQLKNSIAISKGKRLYLSQYIGSLDNIASVNRHQRTQKIMSRLMGVTADCVACDLHPDYVTTQLAKKQHLPIIS TQHHLAHLYAAMLEHQIIDQAFAVVWDGNGYGEDGTLWGGEFIAVTADKPQRVATFLPFKLPGGAAAIKEPRRVAVALLY EVYGKKIASNEVLKSLSPFELSTIKQLLKMISNNINSPLTSSAGRLFDGISSLLNLGQISSFEGEAAMRLEFAAKTSKDK GSYPVPVDFAVTPNIIDWRPMLAAIITDIGNHVSSAIIARRFHNSAAIIILKIAQHYGVTQILLTGGCFQNSLLIEITFA LLQEQGIAVLWHKKLPANDASLCVGQIMGAYKARHSYLNKKQ
Specific function: Along with hypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carb
COG id: COG0068
COG function: function code O; Hydrogenase maturation factor
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 YrdC-like domain [H]
Homologues:
Organism=Escherichia coli, GI2367152, Length=756, Percent_Identity=36.2433862433862, Blast_Score=388, Evalue=1e-109,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001792 - InterPro: IPR017968 - InterPro: IPR004421 - InterPro: IPR017945 - InterPro: IPR006070 - InterPro: IPR011125 [H]
Pfam domain/function: PF00708 Acylphosphatase; PF01300 Sua5_yciO_yrdC; PF07503 zf-HYPF [H]
EC number: NA
Molecular weight: Translated: 84619; Mature: 84619
Theoretical pI: Translated: 8.68; Mature: 8.68
Prosite motif: PS00150 ACYLPHOSPHATASE_1 ; PS51160 ACYLPHOSPHATASE_3 ; PS51163 YRDC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQQRYQISVQGRVQGVGFRPFVAVTAANLNLTGWVRNIRQSVLIEIQGEPFETQKFLQQL CCCCEEEEEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHEEEEECCCCCHHHHHHHHH QSKAPALAKIEQLNHQQIDNNDQTGFHILESSGKNEGVVSISPDIGICEHCQKELFYEEN HHCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHCC RRYRYPFISCTQCGPRYSILQKLPFDRCHTTLNAFPMCEDCLAEYKNLKDRRFHAQGINC CEEECCEEEECCCCCHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHCCCCH AKCGPQVSFINHKGERIAEKEAALTLAINALQAGKILAVKGLTGFHIMVDACNHQAVLRL HHCCCCEEEECCCCHHHHHHHHHEEEEEEHHCCCCEEEEECCCCEEEEEECCCCHHHHHH RARKQRPEKPFALMYPQLSMVKSDCLLGEQEKLLLCSAIAPIVLLENKHSNLSLSPAIAP HHHHCCCCCCEEEECCCHHHHHHHHCCCCCCHHHHHHHHCCEEEEECCCCCCEECCEECC NNPYLGVMLAYTPLHQLICRAINKPLVVTSANRSGEPVCCDNEQALEQLSQLVDGFVMHD CCCCEEEEEHHHHHHHHHHHHCCCCEEEEECCCCCCCEECCCHHHHHHHHHHHHHHHHCC REIYQGLDDSIVKFVNHEPMLLRRARGYVPDYLTLDTEYPSIVALGGQLKNSIAISKGKR HHHHCCCHHHHHHHHCCCHHHHHHHCCCCCCEEEECCCCCCEEEECCHHHCCEEECCCCE LYLSQYIGSLDNIASVNRHQRTQKIMSRLMGVTADCVACDLHPDYVTTQLAKKQHLPIIS EHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHCCCEEC TQHHLAHLYAAMLEHQIIDQAFAVVWDGNGYGEDGTLWGGEFIAVTADKPQRVATFLPFK CHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCEECCEEEEEECCCCCHHHHCCCEE LPGGAAAIKEPRRVAVALLYEVYGKKIASNEVLKSLSPFELSTIKQLLKMISNNINSPLT CCCCCHHHCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCC SSAGRLFDGISSLLNLGQISSFEGEAAMRLEFAAKTSKDKGSYPVPVDFAVTPNIIDWRP HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEHHCCCCCCCCCCCEEEEECCCCCCHHH MLAAIITDIGNHVSSAIIARRFHNSAAIIILKIAQHYGVTQILLTGGCFQNSLLIEITFA HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHCCCEEEEEECCCCCCCHHHHHHHH LLQEQGIAVLWHKKLPANDASLCVGQIMGAYKARHSYLNKKQ HHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MQQRYQISVQGRVQGVGFRPFVAVTAANLNLTGWVRNIRQSVLIEIQGEPFETQKFLQQL CCCCEEEEEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHEEEEECCCCCHHHHHHHHH QSKAPALAKIEQLNHQQIDNNDQTGFHILESSGKNEGVVSISPDIGICEHCQKELFYEEN HHCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHCC RRYRYPFISCTQCGPRYSILQKLPFDRCHTTLNAFPMCEDCLAEYKNLKDRRFHAQGINC CEEECCEEEECCCCCHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHCCCCH AKCGPQVSFINHKGERIAEKEAALTLAINALQAGKILAVKGLTGFHIMVDACNHQAVLRL HHCCCCEEEECCCCHHHHHHHHHEEEEEEHHCCCCEEEEECCCCEEEEEECCCCHHHHHH RARKQRPEKPFALMYPQLSMVKSDCLLGEQEKLLLCSAIAPIVLLENKHSNLSLSPAIAP HHHHCCCCCCEEEECCCHHHHHHHHCCCCCCHHHHHHHHCCEEEEECCCCCCEECCEECC NNPYLGVMLAYTPLHQLICRAINKPLVVTSANRSGEPVCCDNEQALEQLSQLVDGFVMHD CCCCEEEEEHHHHHHHHHHHHCCCCEEEEECCCCCCCEECCCHHHHHHHHHHHHHHHHCC REIYQGLDDSIVKFVNHEPMLLRRARGYVPDYLTLDTEYPSIVALGGQLKNSIAISKGKR HHHHCCCHHHHHHHHCCCHHHHHHHCCCCCCEEEECCCCCCEEEECCHHHCCEEECCCCE LYLSQYIGSLDNIASVNRHQRTQKIMSRLMGVTADCVACDLHPDYVTTQLAKKQHLPIIS EHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHCCCEEC TQHHLAHLYAAMLEHQIIDQAFAVVWDGNGYGEDGTLWGGEFIAVTADKPQRVATFLPFK CHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCEECCEEEEEECCCCCHHHHCCCEE LPGGAAAIKEPRRVAVALLYEVYGKKIASNEVLKSLSPFELSTIKQLLKMISNNINSPLT CCCCCHHHCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCC SSAGRLFDGISSLLNLGQISSFEGEAAMRLEFAAKTSKDKGSYPVPVDFAVTPNIIDWRP HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEHHCCCCCCCCCCCEEEEECCCCCCHHH MLAAIITDIGNHVSSAIIARRFHNSAAIIILKIAQHYGVTQILLTGGCFQNSLLIEITFA HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHCCCEEEEEECCCCCCCHHHHHHHH LLQEQGIAVLWHKKLPANDASLCVGQIMGAYKARHSYLNKKQ HHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]