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The map label for this gene is rlpA [C]

Identifier: 119944889

GI number: 119944889

Start: 1421032

End: 1421814

Strand: Reverse

Name: rlpA [C]

Synonym: Ping_1133

Alternate gene names: 119944889

Gene position: 1421814-1421032 (Counterclockwise)

Preceding gene: 119944890

Following gene: 119944887

Centisome position: 31.18

GC content: 38.83

Gene sequence:

>783_bases
ATGCGCAAATTTAAAATATCACTCATATTTCTGCTGACTATGATGCTTATTGGATGCAGCTCTCAGGATACTGCCGACGG
CCGTTATCAAATAGAGAATGATCACCGTCCGGATAACCCTCCCCCATTGGGTCATGTTGAAGATGTTAATCCTCGTTATG
AACCTTATTCTCTGGGTGGCAATAAAGATTATACTGTGCGTGGTATTGATTACAGGGTGCTGACAGGTATTACCAAGCTG
AGCGAAAGAGGCATAGCCTCGTGGTATGGTAATAAATTTCATGGCCACTTAACCTCAAATGGTGAACGTTATGACATGTT
TGCAATGACCGCAGCCCATAAAAACTTACCTTTACCCAGTTATGTTAGGGTAATAAATTTGGAAAATAACAAACGGATCG
TTGTGCGGGTCAATGACCGAGGACCCTTTCACGAAGGACGAATTATTGATCTGTCATACGCTGCGGCCTATAAACTCGAT
ATTTTAAAAACGGGTACGGCAAAAGTTGAAATTCAACTTCTCCATTTCCCTGTACAGGAAGATTTGAGCAATCAGTTTAA
CGGCGATTATTACATTCAGTACTTAGTCACTTATTCCGCAGACAAAGCTAATGATTTAGGTAAAAAATACAGGGCTGAAT
ATCAAGTAAAAAGTTTATTTATCGAAGAAGATGAACTTTACAAATTACGTTTAGGACCCTTTAATAGTCAGTTAAGAGCA
GAAAAAATATTGGCTGAAATAAAAAATGGTTACCCGCAGGCATTTATTGTGCATAAGAAATAA

Upstream 100 bases:

>100_bases
AATAAGTTATGGAGGCACCTCAATTGTTACTTTAATAGCCGGTTTCGGGGTGTTAATGTCTATTAATACCCATAAACGTT
TTAATACAAACTGATAAAAA

Downstream 100 bases:

>100_bases
TGTTTAAATAAAATAAGCCTATTCGAAAATAGGCTTATTTTTTATACCCAAACTATTATTGCCCGGCTATTTTCATTTTG
TTAATTAAAATAGAGCCTGT

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MRKFKISLIFLLTMMLIGCSSQDTADGRYQIENDHRPDNPPPLGHVEDVNPRYEPYSLGGNKDYTVRGIDYRVLTGITKL
SERGIASWYGNKFHGHLTSNGERYDMFAMTAAHKNLPLPSYVRVINLENNKRIVVRVNDRGPFHEGRIIDLSYAAAYKLD
ILKTGTAKVEIQLLHFPVQEDLSNQFNGDYYIQYLVTYSADKANDLGKKYRAEYQVKSLFIEEDELYKLRLGPFNSQLRA
EKILAEIKNGYPQAFIVHKK

Sequences:

>Translated_260_residues
MRKFKISLIFLLTMMLIGCSSQDTADGRYQIENDHRPDNPPPLGHVEDVNPRYEPYSLGGNKDYTVRGIDYRVLTGITKL
SERGIASWYGNKFHGHLTSNGERYDMFAMTAAHKNLPLPSYVRVINLENNKRIVVRVNDRGPFHEGRIIDLSYAAAYKLD
ILKTGTAKVEIQLLHFPVQEDLSNQFNGDYYIQYLVTYSADKANDLGKKYRAEYQVKSLFIEEDELYKLRLGPFNSQLRA
EKILAEIKNGYPQAFIVHKK
>Mature_260_residues
MRKFKISLIFLLTMMLIGCSSQDTADGRYQIENDHRPDNPPPLGHVEDVNPRYEPYSLGGNKDYTVRGIDYRVLTGITKL
SERGIASWYGNKFHGHLTSNGERYDMFAMTAAHKNLPLPSYVRVINLENNKRIVVRVNDRGPFHEGRIIDLSYAAAYKLD
ILKTGTAKVEIQLLHFPVQEDLSNQFNGDYYIQYLVTYSADKANDLGKKYRAEYQVKSLFIEEDELYKLRLGPFNSQLRA
EKILAEIKNGYPQAFIVHKK

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=161, Percent_Identity=37.888198757764, Blast_Score=115, Evalue=4e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 29930; Mature: 29930

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKFKISLIFLLTMMLIGCSSQDTADGRYQIENDHRPDNPPPLGHVEDVNPRYEPYSLGG
CCEEEHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCC
NKDYTVRGIDYRVLTGITKLSERGIASWYGNKFHGHLTSNGERYDMFAMTAAHKNLPLPS
CCCEEEEECCCHHHHHHHHHHHCCCHHHCCCCEEEEECCCCCEEEEEEEEECCCCCCCCC
YVRVINLENNKRIVVRVNDRGPFHEGRIIDLSYAAAYKLDILKTGTAKVEIQLLHFPVQE
EEEEEEECCCCEEEEEECCCCCCCCCEEEEEEEHEEEEEEEEECCCEEEEEEEEECCHHH
DLSNQFNGDYYIQYLVTYSADKANDLGKKYRAEYQVKSLFIEEDELYKLRLGPFNSQLRA
HHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHEEEEEEEECCCCEEEEEECCCCCHHHH
EKILAEIKNGYPQAFIVHKK
HHHHHHHHCCCCCEEEEECC
>Mature Secondary Structure
MRKFKISLIFLLTMMLIGCSSQDTADGRYQIENDHRPDNPPPLGHVEDVNPRYEPYSLGG
CCEEEHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCC
NKDYTVRGIDYRVLTGITKLSERGIASWYGNKFHGHLTSNGERYDMFAMTAAHKNLPLPS
CCCEEEEECCCHHHHHHHHHHHCCCHHHCCCCEEEEECCCCCEEEEEEEEECCCCCCCCC
YVRVINLENNKRIVVRVNDRGPFHEGRIIDLSYAAAYKLDILKTGTAKVEIQLLHFPVQE
EEEEEEECCCCEEEEEECCCCCCCCCEEEEEEEHEEEEEEEEECCCEEEEEEEEECCHHH
DLSNQFNGDYYIQYLVTYSADKANDLGKKYRAEYQVKSLFIEEDELYKLRLGPFNSQLRA
HHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHEEEEEEEECCCCEEEEEECCCCCHHHH
EKILAEIKNGYPQAFIVHKK
HHHHHHHHCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]