| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is cbpA [H]
Identifier: 119944797
GI number: 119944797
Start: 1310503
End: 1311450
Strand: Reverse
Name: cbpA [H]
Synonym: Ping_1039
Alternate gene names: 119944797
Gene position: 1311450-1310503 (Counterclockwise)
Preceding gene: 119944799
Following gene: 119944796
Centisome position: 28.76
GC content: 44.94
Gene sequence:
>948_bases ATGGAATATAAAGATTATTACAAAATAATGGGTCTACAGCGCAATGCTTCAAAGGATGAAATCAAACGCGCATACCGCAA GTTAGCGCGTAAATATCATCCTGACATCAGCAAAGAGCCCGAAGCTGAAGCTAACTTTAAAGAGTTGTCCGAGGCCTATG AAGTACTTAGGGATCCCAAAAAACGTGCAACCTACGACCGTTTAGATCCAAATTTAAAATCCTGGCAGCAGTTCGACAGG CAAGCAGATAGAGATTCAAGTTTTGATTTTAACAAAGGGGGATTTGACGATCTCCATGGTGGTACCTTTAGCGATTTTTT TGAAGCCTTTTTTGGTCATAAAGATCAATACACTGATTTTAATCCTAGTGCACAGTTTAATGCACGTGGATCTGACCACC ATGCCAGCGTTCGGATTGACTTAGAAGATGCCTTTTACGGTGCTACACGTAGCATTGATCTGCAAAAACAGGAAGCAGAT AGTCTTGGAGTAATACAGGCAGTTAATCGTACGCTTAATATTAAAATTCCCAAGGGCATCAAAGATGGGCAACAGATTCG CCTTTCCGGACAAGGCTCGAACGGTATGGGGCAGGGAGCAAAAGGAGATCTTTATCTGGAGGTTCATTTTAACCCTCACC CCCTTTACCGACTCGAGCAACAAGATCTGCATATGCAACTGCCAGTGACTCCCTGGGAAGCGGCGCTGGGCGCAACGGTA AAACTTCCCACTCCCGCTGGCGTGGTGGACCTTAAAATTTCACCCGGATCAAACAGTGGCAGCAAGCTGCGCTTAAAAGG GCGAGGTATCCCTAGTAATCCTGCTGGGGATATTTATGTCATACTCAGTGTTGTCACACCACCAGGGACGAGTGAGGCAG CCAGAAAACTTTATAAAGAGATGGCAAAGACAATGGCATTTAACCCAAGGGTTAAAATGGGGGTATAA
Upstream 100 bases:
>100_bases GCAGACTAATCTCTAATTAAGCTTCTCCAATCTAGGGGCGATTTTTTACGCCATTTTTTTAATGATTTTATCGTTGAAAT TTCAATAAGGTAGATCGATC
Downstream 100 bases:
>100_bases AACATGATCAAGCAAACCGTATTATCAGGGTTGATTGTTGAGAAAGCGACCATTTTCACTCTGGAGGAACTTAGCCATGC CTGTGGTAAGCCTACCGAGT
Product: heat shock protein DnaJ domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 315; Mature: 315
Protein sequence:
>315_residues MEYKDYYKIMGLQRNASKDEIKRAYRKLARKYHPDISKEPEAEANFKELSEAYEVLRDPKKRATYDRLDPNLKSWQQFDR QADRDSSFDFNKGGFDDLHGGTFSDFFEAFFGHKDQYTDFNPSAQFNARGSDHHASVRIDLEDAFYGATRSIDLQKQEAD SLGVIQAVNRTLNIKIPKGIKDGQQIRLSGQGSNGMGQGAKGDLYLEVHFNPHPLYRLEQQDLHMQLPVTPWEAALGATV KLPTPAGVVDLKISPGSNSGSKLRLKGRGIPSNPAGDIYVILSVVTPPGTSEAARKLYKEMAKTMAFNPRVKMGV
Sequences:
>Translated_315_residues MEYKDYYKIMGLQRNASKDEIKRAYRKLARKYHPDISKEPEAEANFKELSEAYEVLRDPKKRATYDRLDPNLKSWQQFDR QADRDSSFDFNKGGFDDLHGGTFSDFFEAFFGHKDQYTDFNPSAQFNARGSDHHASVRIDLEDAFYGATRSIDLQKQEAD SLGVIQAVNRTLNIKIPKGIKDGQQIRLSGQGSNGMGQGAKGDLYLEVHFNPHPLYRLEQQDLHMQLPVTPWEAALGATV KLPTPAGVVDLKISPGSNSGSKLRLKGRGIPSNPAGDIYVILSVVTPPGTSEAARKLYKEMAKTMAFNPRVKMGV >Mature_315_residues MEYKDYYKIMGLQRNASKDEIKRAYRKLARKYHPDISKEPEAEANFKELSEAYEVLRDPKKRATYDRLDPNLKSWQQFDR QADRDSSFDFNKGGFDDLHGGTFSDFFEAFFGHKDQYTDFNPSAQFNARGSDHHASVRIDLEDAFYGATRSIDLQKQEAD SLGVIQAVNRTLNIKIPKGIKDGQQIRLSGQGSNGMGQGAKGDLYLEVHFNPHPLYRLEQQDLHMQLPVTPWEAALGATV KLPTPAGVVDLKISPGSNSGSKLRLKGRGIPSNPAGDIYVILSVVTPPGTSEAARKLYKEMAKTMAFNPRVKMGV
Specific function: DNA-binding protein that preferentially recognizes a curved DNA sequence. It is probably a functional analog of DnaJ; displays overlapping activities with DnaJ, but functions under different conditions, probably acting as a molecular chaperone in an adapt
COG id: COG2214
COG function: function code O; DnaJ-class molecular chaperone
Gene ontology:
Cell location: Cytoplasm, nucleoid [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 J domain [H]
Homologues:
Organism=Homo sapiens, GI201862587, Length=344, Percent_Identity=28.1976744186047, Blast_Score=122, Evalue=4e-28, Organism=Homo sapiens, GI201862518, Length=344, Percent_Identity=28.1976744186047, Blast_Score=122, Evalue=4e-28, Organism=Homo sapiens, GI56549115, Length=344, Percent_Identity=28.1976744186047, Blast_Score=122, Evalue=5e-28, Organism=Homo sapiens, GI6631085, Length=333, Percent_Identity=27.6276276276276, Blast_Score=121, Evalue=1e-27, Organism=Homo sapiens, GI5453690, Length=337, Percent_Identity=27.893175074184, Blast_Score=117, Evalue=1e-26, Organism=Homo sapiens, GI205360838, Length=341, Percent_Identity=27.5659824046921, Blast_Score=112, Evalue=6e-25, Organism=Homo sapiens, GI205360840, Length=341, Percent_Identity=27.5659824046921, Blast_Score=111, Evalue=8e-25, Organism=Homo sapiens, GI39204547, Length=320, Percent_Identity=26.25, Blast_Score=105, Evalue=7e-23, Organism=Homo sapiens, GI7706495, Length=344, Percent_Identity=27.0348837209302, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI9558755, Length=111, Percent_Identity=45.045045045045, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI4504511, Length=151, Percent_Identity=36.4238410596026, Blast_Score=82, Evalue=9e-16, Organism=Homo sapiens, GI17388799, Length=119, Percent_Identity=42.8571428571429, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI4885495, Length=119, Percent_Identity=42.8571428571429, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI194328760, Length=151, Percent_Identity=36.4238410596026, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI194328758, Length=151, Percent_Identity=36.4238410596026, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI23503241, Length=74, Percent_Identity=51.3513513513513, Blast_Score=75, Evalue=7e-14, Organism=Homo sapiens, GI72534740, Length=109, Percent_Identity=36.697247706422, Blast_Score=75, Evalue=8e-14, Organism=Homo sapiens, GI194306642, Length=113, Percent_Identity=38.9380530973451, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI194306640, Length=113, Percent_Identity=38.9380530973451, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI21553335, Length=65, Percent_Identity=55.3846153846154, Blast_Score=74, Evalue=3e-13, Organism=Homo sapiens, GI47777312, Length=65, Percent_Identity=56.9230769230769, Blast_Score=73, Evalue=4e-13, Organism=Homo sapiens, GI56687498, Length=63, Percent_Identity=49.2063492063492, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI5031741, Length=61, Percent_Identity=57.3770491803279, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI27151736, Length=141, Percent_Identity=36.8794326241135, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI217035105, Length=88, Percent_Identity=38.6363636363636, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI88501736, Length=141, Percent_Identity=36.8794326241135, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI22749377, Length=109, Percent_Identity=36.697247706422, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI45504382, Length=62, Percent_Identity=50, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI1787235, Length=322, Percent_Identity=42.2360248447205, Blast_Score=244, Evalue=4e-66, Organism=Escherichia coli, GI1786197, Length=355, Percent_Identity=29.0140845070423, Blast_Score=150, Evalue=2e-37, Organism=Caenorhabditis elegans, GI17534355, Length=338, Percent_Identity=27.2189349112426, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17553098, Length=331, Percent_Identity=28.0966767371601, Blast_Score=99, Evalue=4e-21, Organism=Caenorhabditis elegans, GI212645553, Length=309, Percent_Identity=26.537216828479, Blast_Score=94, Evalue=7e-20, Organism=Caenorhabditis elegans, GI17553096, Length=356, Percent_Identity=24.7191011235955, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI115532476, Length=85, Percent_Identity=45.8823529411765, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17507263, Length=62, Percent_Identity=51.6129032258064, Blast_Score=71, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17554644, Length=102, Percent_Identity=43.1372549019608, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17568643, Length=75, Percent_Identity=48, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17538236, Length=124, Percent_Identity=35.4838709677419, Blast_Score=65, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17551190, Length=75, Percent_Identity=49.3333333333333, Blast_Score=65, Evalue=5e-11, Organism=Caenorhabditis elegans, GI86563276, Length=117, Percent_Identity=39.3162393162393, Blast_Score=64, Evalue=1e-10, Organism=Saccharomyces cerevisiae, GI6324265, Length=152, Percent_Identity=32.8947368421053, Blast_Score=72, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6323813, Length=141, Percent_Identity=38.2978723404255, Blast_Score=72, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6323870, Length=66, Percent_Identity=46.969696969697, Blast_Score=67, Evalue=4e-12, Organism=Saccharomyces cerevisiae, GI6323119, Length=65, Percent_Identity=50.7692307692308, Blast_Score=64, Evalue=4e-11, Organism=Drosophila melanogaster, GI85726398, Length=353, Percent_Identity=28.328611898017, Blast_Score=117, Evalue=1e-26, Organism=Drosophila melanogaster, GI19920464, Length=308, Percent_Identity=28.2467532467532, Blast_Score=115, Evalue=5e-26, Organism=Drosophila melanogaster, GI24658562, Length=322, Percent_Identity=30.4347826086957, Blast_Score=113, Evalue=2e-25, Organism=Drosophila melanogaster, GI24658555, Length=322, Percent_Identity=30.4347826086957, Blast_Score=113, Evalue=2e-25, Organism=Drosophila melanogaster, GI18858081, Length=345, Percent_Identity=28.4057971014493, Blast_Score=100, Evalue=2e-21, Organism=Drosophila melanogaster, GI24668492, Length=64, Percent_Identity=51.5625, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI28574949, Length=351, Percent_Identity=24.2165242165242, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI24654066, Length=125, Percent_Identity=42.4, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI24654070, Length=125, Percent_Identity=42.4, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI24654068, Length=125, Percent_Identity=42.4, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI24654072, Length=125, Percent_Identity=42.4, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI45549272, Length=64, Percent_Identity=56.25, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI45552813, Length=64, Percent_Identity=56.25, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI45552811, Length=64, Percent_Identity=56.25, Blast_Score=74, Evalue=9e-14, Organism=Drosophila melanogaster, GI24584630, Length=106, Percent_Identity=42.4528301886792, Blast_Score=74, Evalue=9e-14, Organism=Drosophila melanogaster, GI17648033, Length=106, Percent_Identity=42.4528301886792, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI161077138, Length=64, Percent_Identity=57.8125, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI24646562, Length=61, Percent_Identity=57.3770491803279, Blast_Score=72, Evalue=7e-13, Organism=Drosophila melanogaster, GI24646560, Length=61, Percent_Identity=57.3770491803279, Blast_Score=72, Evalue=7e-13, Organism=Drosophila melanogaster, GI24646558, Length=61, Percent_Identity=57.3770491803279, Blast_Score=72, Evalue=7e-13, Organism=Drosophila melanogaster, GI24646556, Length=61, Percent_Identity=57.3770491803279, Blast_Score=72, Evalue=7e-13, Organism=Drosophila melanogaster, GI21357547, Length=61, Percent_Identity=57.3770491803279, Blast_Score=72, Evalue=7e-13, Organism=Drosophila melanogaster, GI24641698, Length=63, Percent_Identity=46.031746031746, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24641696, Length=63, Percent_Identity=46.031746031746, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI21355911, Length=76, Percent_Identity=50, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI20129487, Length=77, Percent_Identity=46.7532467532467, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24584014, Length=77, Percent_Identity=46.7532467532467, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI18859921, Length=69, Percent_Identity=46.3768115942029, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002939 - InterPro: IPR001623 - InterPro: IPR018253 - InterPro: IPR008971 - InterPro: IPR015609 - InterPro: IPR003095 [H]
Pfam domain/function: PF00226 DnaJ; PF01556 DnaJ_C [H]
EC number: NA
Molecular weight: Translated: 35333; Mature: 35333
Theoretical pI: Translated: 9.40; Mature: 9.40
Prosite motif: PS00636 DNAJ_1 ; PS50076 DNAJ_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEYKDYYKIMGLQRNASKDEIKRAYRKLARKYHPDISKEPEAEANFKELSEAYEVLRDPK CCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCH KRATYDRLDPNLKSWQQFDRQADRDSSFDFNKGGFDDLHGGTFSDFFEAFFGHKDQYTDF HHCCHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC NPSAQFNARGSDHHASVRIDLEDAFYGATRSIDLQKQEADSLGVIQAVNRTLNIKIPKGI CCCCEECCCCCCCCEEEEEEEHHHHCCCCCCCCCCHHHCCHHHHHHHHCCEEEEEECCCC KDGQQIRLSGQGSNGMGQGAKGDLYLEVHFNPHPLYRLEQQDLHMQLPVTPWEAALGATV CCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCEEECCCCHHHHHHCCEE KLPTPAGVVDLKISPGSNSGSKLRLKGRGIPSNPAGDIYVILSVVTPPGTSEAARKLYKE ECCCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHH MAKTMAFNPRVKMGV HHHHHCCCCCEECCC >Mature Secondary Structure MEYKDYYKIMGLQRNASKDEIKRAYRKLARKYHPDISKEPEAEANFKELSEAYEVLRDPK CCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCH KRATYDRLDPNLKSWQQFDRQADRDSSFDFNKGGFDDLHGGTFSDFFEAFFGHKDQYTDF HHCCHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC NPSAQFNARGSDHHASVRIDLEDAFYGATRSIDLQKQEADSLGVIQAVNRTLNIKIPKGI CCCCEECCCCCCCCEEEEEEEHHHHCCCCCCCCCCHHHCCHHHHHHHHCCEEEEEECCCC KDGQQIRLSGQGSNGMGQGAKGDLYLEVHFNPHPLYRLEQQDLHMQLPVTPWEAALGATV CCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCEEECCCCHHHHHHCCEE KLPTPAGVVDLKISPGSNSGSKLRLKGRGIPSNPAGDIYVILSVVTPPGTSEAARKLYKE ECCCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHH MAKTMAFNPRVKMGV HHHHHCCCCCEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA