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The map label for this gene is ppdD [H]

Identifier: 119944254

GI number: 119944254

Start: 605080

End: 605484

Strand: Direct

Name: ppdD [H]

Synonym: Ping_0478

Alternate gene names: 119944254

Gene position: 605080-605484 (Clockwise)

Preceding gene: 119944253

Following gene: 119944255

Centisome position: 13.27

GC content: 44.2

Gene sequence:

>405_bases
GTGAAAAAAATACAACAGGGTTTTACATTAATCGAGCTGTTAATCGTTATCGCGATTATCGGTATTCTGGCAGCTGTTGC
GTTGCCGGCCTATAATACTTATACGCAAAAAGCGAAATACACCGAAGTGGTTTTGGCGACAGCCGGGTATAAAACGGCCA
TTGAAACCTGTGCACAAACGGAAGGATCTGTTGGTGCCTGTGATACTATACTTAAGATAGGAATGCCGACTTTTGTTGCT
TATGGAGAAGTGGCTAGTATGGCGATAACAGCAGCAACGGCTGTGATCACTGCAACAGGGACAGCAGCAGTTGGTAGTTA
TACCTATATTTTAACGCCAACATATGCGAATGGTCGTGTTACTTGGGTGGCGACGGGAACTTGTTTTGCCAATGGTGTTT
GTTAA

Upstream 100 bases:

>100_bases
CCCTTTATATATAGGCCCTTTATATTAAGGAGAAAAAAACCAAAATTTTAAATAACTCAGACTTAACTCAGACTTAACTA
CGACTATAAAGGAAAAGACT

Downstream 100 bases:

>100_bases
CAGCTAACGTCACCTCGATAATCTCAGCGGCCTGGTGTCCAGCAGGGCCGCTTGTCATTTACTCTCCTTTGATAAACGCC
TGTCCTTAGCCAGCTCTACT

Product: prepilin peptidase dependent protein D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MKKIQQGFTLIELLIVIAIIGILAAVALPAYNTYTQKAKYTEVVLATAGYKTAIETCAQTEGSVGACDTILKIGMPTFVA
YGEVASMAITAATAVITATGTAAVGSYTYILTPTYANGRVTWVATGTCFANGVC

Sequences:

>Translated_134_residues
MKKIQQGFTLIELLIVIAIIGILAAVALPAYNTYTQKAKYTEVVLATAGYKTAIETCAQTEGSVGACDTILKIGMPTFVA
YGEVASMAITAATAVITATGTAAVGSYTYILTPTYANGRVTWVATGTCFANGVC
>Mature_134_residues
MKKIQQGFTLIELLIVIAIIGILAAVALPAYNTYTQKAKYTEVVLATAGYKTAIETCAQTEGSVGACDTILKIGMPTFVA
YGEVASMAITAATAVITATGTAAVGSYTYILTPTYANGRVTWVATGTCFANGVC

Specific function: Not yet known [H]

COG id: COG4969

COG function: function code NU; Tfp pilus assembly protein, major pilin PilA

Gene ontology:

Cell location: Fimbrium [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-Me-Phe pilin family [H]

Homologues:

Organism=Escherichia coli, GI1786297, Length=124, Percent_Identity=37.9032258064516, Blast_Score=83, Evalue=8e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012902
- InterPro:   IPR001120 [H]

Pfam domain/function: PF07963 N_methyl [H]

EC number: NA

Molecular weight: Translated: 13859; Mature: 13859

Theoretical pI: Translated: 7.89; Mature: 7.89

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIQQGFTLIELLIVIAIIGILAAVALPAYNTYTQKAKYTEVVLATAGYKTAIETCAQT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHEEEEEECCHHHHHHHHHCC
EGSVGACDTILKIGMPTFVAYGEVASMAITAATAVITATGTAAVGSYTYILTPTYANGRV
CCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEEEEECCCCEE
TWVATGTCFANGVC
EEEEECCEECCCCC
>Mature Secondary Structure
MKKIQQGFTLIELLIVIAIIGILAAVALPAYNTYTQKAKYTEVVLATAGYKTAIETCAQT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHEEEEEECCHHHHHHHHHCC
EGSVGACDTILKIGMPTFVAYGEVASMAITAATAVITATGTAAVGSYTYILTPTYANGRV
CCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEEEEECCCCEE
TWVATGTCFANGVC
EEEEECCEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7959070; 8202364; 9278503 [H]